Jatropha Genome Database

JcCB0603701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0603701.10 - phase: 0 /partial
         (136 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028566001 assembled CDS                                       184   1e-47
GSVIVT01028576001 assembled CDS                                       174   8e-45
GSVIVT01028569001 assembled CDS                                       172   3e-44
GSVIVT01011343001 assembled CDS                                       159   3e-40
GSVIVT01018742001 assembled CDS                                        77   2e-15
GSVIVT01018744001 assembled CDS                                        77   3e-15
GSVIVT01021697001 assembled CDS                                        68   2e-12

>GSVIVT01028566001 assembled CDS
          Length = 297

 Score =  184 bits (467), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 110/137 (80%), Gaps = 2/137 (1%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNLGWAYMQKSN++AAE VY+KAQMIDPDANKACNL LCLIKQAR  EA+ +L  V++G 
Sbjct: 162 GNLGWAYMQKSNYMAAEVVYKKAQMIDPDANKACNLALCLIKQARNSEARSILNEVLQGN 221

Query: 61  YPGSEDIKSIKRAQELLREVETK-MPSPELTGILGFNLDDHDFVKGLEEMMEEWAPARSK 119
            PGSED K+  RAQEL+ EVE + +P      I  F+L+D D + GLE+++ EWAP+R+K
Sbjct: 222 IPGSEDCKAQNRAQELMVEVEPRWLPPSTKMKIARFDLED-DLIDGLEKLLNEWAPSRTK 280

Query: 120 RLPIFEQISSFRDQLAC 136
           RLPIFE+ISS+R+QLAC
Sbjct: 281 RLPIFEEISSYRNQLAC 297


>GSVIVT01028576001 assembled CDS
          Length = 296

 Score =  174 bits (442), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 107/138 (77%), Gaps = 3/138 (2%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNLGW YMQKSN++AAE VY+KAQMIDPDANKACNL LCLI Q R+ EA  VL+ V++G+
Sbjct: 160 GNLGWVYMQKSNYMAAEVVYKKAQMIDPDANKACNLALCLINQGRYTEAHSVLKEVLQGK 219

Query: 61  YPGSEDIKSIKRAQELLREVETK-MPSPELTGILGFNLDDHDFVKGLEEMMEEWAPARSK 119
            P SED K+  RAQEL+ EVE K +P  E   + GF+L+D DF  G E+++  WAP R+K
Sbjct: 220 LPNSEDCKAQNRAQELMLEVEPKWLPPSETIKLEGFDLED-DFSDGFEKVLNIWAPFRTK 278

Query: 120 RLPIF-EQISSFRDQLAC 136
           RLPIF E+ISS+R+QLAC
Sbjct: 279 RLPIFVEEISSYRNQLAC 296


>GSVIVT01028569001 assembled CDS
          Length = 297

 Score =  172 bits (437), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 106/135 (78%), Gaps = 2/135 (1%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNLGWAYMQKS F+AAE VY+KAQMIDPDANKACNL  CLIKQAR  EA  VL  V++G+
Sbjct: 162 GNLGWAYMQKSKFIAAEVVYKKAQMIDPDANKACNLARCLIKQARNVEAHLVLNEVLQGK 221

Query: 61  YPGSEDIKSIKRAQELLREVETK-MPSPELTGILGFNLDDHDFVKGLEEMMEEWAPARSK 119
             GS+D ++  RAQEL+ E+E K +P PE   I  F+L+D DF+  LE+++ EW+P R+K
Sbjct: 222 LLGSKDCQTQNRAQELMLELEPKWLPPPETVKITRFDLED-DFIDELEKLLNEWSPLRTK 280

Query: 120 RLPIFEQISSFRDQL 134
           RLPIFE+ISS+R+QL
Sbjct: 281 RLPIFEEISSYRNQL 295


>GSVIVT01011343001 assembled CDS
          Length = 292

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 100/136 (73%), Gaps = 5/136 (3%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNLGWAYMQ++N+  AE VY++AQ IDPDANKACNLGLCLIKQAR+DEA+ VL++V+ G+
Sbjct: 162 GNLGWAYMQQTNYATAEVVYREAQTIDPDANKACNLGLCLIKQARYDEARSVLEDVLHGK 221

Query: 61  YPGSEDIKSIKRAQELLREVETKMPSPELTGILGFNLDDHDFVKGLEEMMEEWAPARSKR 120
           + GS D KS  RA ELL EVE              +L+D  F     E+M++ +P+R++R
Sbjct: 222 FCGSNDPKSRNRAHELLEEVEPWQSEAVFPSTSEVSLEDCFF-----ELMKQSSPSRTRR 276

Query: 121 LPIFEQISSFRDQLAC 136
           LPIFE+IS FRDQLAC
Sbjct: 277 LPIFEEISPFRDQLAC 292


>GSVIVT01018742001 assembled CDS
          Length = 395

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 4/88 (4%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNLGWA MQ++N++ AE  Y++A  + PD NK CNLG+CL+KQ R  EA+  L+ V    
Sbjct: 179 GNLGWALMQRNNYIEAEDAYRRALSMTPDNNKMCNLGICLMKQGRILEAKETLRRVKPAV 238

Query: 61  YPG----SEDIKSIKRAQELLREVETKM 84
             G       +K+ +RA+++L ++E++M
Sbjct: 239 ADGLRGVDSHLKAFERARQMLLDLESEM 266


>GSVIVT01018744001 assembled CDS
          Length = 449

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 4/88 (4%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNLGWA MQ++N++ AE  Y++A  + PD NK CNLG+CL+KQ R  EA+  L+ V    
Sbjct: 176 GNLGWALMQQNNYIEAEDAYRRALSMAPDNNKMCNLGICLMKQGRILEAKETLRRVKPAV 235

Query: 61  YPGSEDI----KSIKRAQELLREVETKM 84
             G   +    K+ +RA+++L ++E++M
Sbjct: 236 ADGPRGVDSHLKAFERARQMLLDLESEM 263


>GSVIVT01021697001 assembled CDS
          Length = 673

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNL WAY+Q+ N+  A  +Y++A  +DPD NK CNL +CL+   +  EA+ +L  +    
Sbjct: 190 GNLAWAYLQQGNYKTAGELYKQALALDPDRNKECNLAICLMYMNKIKEAKAMLYAIQVSS 249

Query: 61  YPGSED---IKSIKRAQELLREVE 81
             G  D   +KS +RA ++L E+E
Sbjct: 250 QNGRMDDSYVKSFERASQVLTELE 273