Jatropha Genome Database
- JcCB0601851.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0601851.10 + phase: 1 /pseudo/partial
(85 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01037591001 assembled CDS 177 7e-46
GSVIVT01034615001 assembled CDS 157 7e-40
GSVIVT01011026001 assembled CDS 118 7e-28
GSVIVT01031248001 assembled CDS 53 2e-08
GSVIVT01008118001 assembled CDS 49 4e-07
GSVIVT01030092001 assembled CDS 48 1e-06
GSVIVT01031116001 assembled CDS 46 3e-06
>GSVIVT01037591001 assembled CDS
Length = 1049
Score = 177 bits (450), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 84/85 (98%), Positives = 85/85 (100%)
Query: 1 LAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLH 60
LAGATADVHCYDV+TNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLH
Sbjct: 116 LAGATADVHCYDVITNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLH 175
Query: 61 VLDLTQQRPRWHRVVVQGPGPGPRY 85
VLDLTQQRPRWHRVVVQGPGPGPRY
Sbjct: 176 VLDLTQQRPRWHRVVVQGPGPGPRY 200
>GSVIVT01034615001 assembled CDS
Length = 928
Score = 157 bits (398), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 78/85 (91%)
Query: 1 LAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLH 60
LAGATADVHCYD+ + KWSRITP GEPPTPRAAHVA AVGTMVVIQGGIGPAGLS+EDLH
Sbjct: 114 LAGATADVHCYDISSKKWSRITPLGEPPTPRAAHVAAAVGTMVVIQGGIGPAGLSSEDLH 173
Query: 61 VLDLTQQRPRWHRVVVQGPGPGPRY 85
LDLTQQ+PRWH+V VQG GPGPRY
Sbjct: 174 ALDLTQQQPRWHKVAVQGSGPGPRY 198
>GSVIVT01011026001 assembled CDS
Length = 888
Score = 118 bits (295), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 68/85 (80%)
Query: 1 LAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLH 60
LAG T VH YDVLT KW+R+ P GEPP+ RAAH A AVGTMVV QGGIGPAG S +DL+
Sbjct: 71 LAGVTNSVHSYDVLTRKWTRLRPAGEPPSVRAAHAAAAVGTMVVFQGGIGPAGHSTDDLY 130
Query: 61 VLDLTQQRPRWHRVVVQGPGPGPRY 85
VLDLT + +WHRVVVQG GPGPRY
Sbjct: 131 VLDLTNDKYKWHRVVVQGQGPGPRY 155
>GSVIVT01031248001 assembled CDS
Length = 640
Score = 53.1 bits (126), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 7 DVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVG-TMVVIQGGIGPAGLS-AEDLHVLDL 64
D+H D+ + +W+R G PP+PR +H AT VG +VI GG G + D HVLDL
Sbjct: 104 DLHILDLGSKEWTRPECRGAPPSPRESHTATLVGDEKLVIFGGSGEGEANYLNDFHVLDL 163
Query: 65 TQQRPRWHRVVVQGPGPGPR 84
RW V+G P PR
Sbjct: 164 KTM--RWTSPEVKGDTPAPR 181
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 2 AGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHV 61
A D H D+ T +W+ G+ P PR +H A A+G +++ GG D+ +
Sbjct: 152 ANYLNDFHVLDLKTMRWTSPEVKGDTPAPRDSHSAVAIGNKLIVYGG-DCGDRYHGDIDI 210
Query: 62 LDLTQQRPRWHRVVVQGPGPGPR 84
LD+ W R+ VQG PG R
Sbjct: 211 LDMDTL--TWSRLSVQGSSPGVR 231
Score = 44.7 bits (104), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 7 DVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQ 66
D+ D+ T WSR++ G P RA H A ++GT V I GG+G D+ VLD+
Sbjct: 207 DIDILDMDTLTWSRLSVQGSSPGVRAGHAAVSIGTKVYIIGGVGDKHY-YNDVWVLDVIT 265
Query: 67 QRPRWHRVVVQGPGPGPRY 85
W+++ ++G P R+
Sbjct: 266 --CLWNQLEIRGQQPQGRF 282
>GSVIVT01008118001 assembled CDS
Length = 605
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 5 TADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSA-EDLHVLD 63
T VH +D + W+ G PPTPR +H T VG + + GG G++ +DLH+LD
Sbjct: 54 TNQVHVFDTVKKTWNEPMIKGSPPTPRDSHSCTTVGDNLFVFGGTD--GMNPLKDLHILD 111
Query: 64 LTQQRPRWHRVVVQGPGPGPR 84
+ W V+G GP R
Sbjct: 112 TSTH--TWISPSVRGEGPEAR 130
Score = 47.4 bits (111), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 6 ADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLT 65
+DVH D T W + G+ PRA H A G + + GG A +DLH+LD
Sbjct: 212 SDVHILDADTLVWRELNASGQMLPPRAGHTTVAFGKNLFVFGGFTDAQNLYDDLHMLD-- 269
Query: 66 QQRPRWHRVVVQGPGPGPRY 85
W +V+ G GP R+
Sbjct: 270 ADTGLWTKVLATGDGPSARF 289
>GSVIVT01030092001 assembled CDS
Length = 275
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 2 AGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGG 48
G T DVHC+D+ KW+++ GE P+PR+ + +G + I GG
Sbjct: 142 CGETDDVHCFDLAHEKWAQVDTKGEKPSPRSVFSSLVIGKYIFIYGG 188
>GSVIVT01031116001 assembled CDS
Length = 674
Score = 46.2 bits (108), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 15 TNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRV 74
T W I G PP+PR+ H A ++ G G DLHVLDL Q W R
Sbjct: 334 TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHATCFNDLHVLDL--QAMEWSRP 391
Query: 75 VVQGPGPGPR 84
QG P PR
Sbjct: 392 TQQGDIPTPR 401