Jatropha Genome Database

JcCB0600521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0600521.10 - phase: 0 /pseudo/partial
         (236 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018681001 assembled CDS                                       298   1e-81
GSVIVT01025382001 assembled CDS                                        53   1e-07

>GSVIVT01018681001 assembled CDS
          Length = 564

 Score =  298 bits (764), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/177 (88%), Positives = 166/177 (93%), Gaps = 1/177 (0%)

Query: 40  TVACCYGCGAPLQTLDQEAPGYVLPETYELKKRHRQLRTVLCGRCKLLSHGHMITAVGGN 99
             + CYGCGAPLQTL+ +APGYV PETYELKK+HRQLRTVLCGRC+LLSHG MITAVGGN
Sbjct: 105 AASACYGCGAPLQTLETDAPGYVDPETYELKKKHRQLRTVLCGRCRLLSHGQMITAVGGN 164

Query: 100 GGYPGGKQFVSADELREKLSHLRHEKALIVKLVDIVDFNGSFLARVRDLAGANPIILVIT 159
           GGY GGKQF+SA+ELREKLSHLRHEKALIVKLVDIVDFNGSFLA VRDLAGANPIILV+T
Sbjct: 165 GGYSGGKQFISAEELREKLSHLRHEKALIVKLVDIVDFNGSFLAHVRDLAGANPIILVVT 224

Query: 160 KVIDLLPKETDLNCVGDWVVEATTKKKLNVLSVHLTSSKSLVGIAGVISEIQKEKKG 216
           KV DLLPKETDLNCVGDWVVEAT KKKLNVLSVHLTSSKSLVGI+GV SEIQKEKKG
Sbjct: 225 KV-DLLPKETDLNCVGDWVVEATMKKKLNVLSVHLTSSKSLVGISGVASEIQKEKKG 280


>GSVIVT01025382001 assembled CDS
          Length = 610

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 42/212 (19%)

Query: 37  VNMTVACCYGCGAPLQTLDQEAPGYVL-PETYELKKRHR-------------------QL 76
           ++ ++  C GCG  +Q  D   PGY + P   +   R R                    L
Sbjct: 122 LSQSLFICPGCGVQMQDSDPVQPGYFIKPSQKDPNYRSRIDRRPVAEEPEISDSLKKGLL 181

Query: 77  RTVLCGRCKLLSHGHMITAVGGNGGYPGGKQFVSADELREKLSHLRHEKALIVKLVDIVD 136
           + V+C RC  L H   +         P   +F     +  +L      +++++ +VD  D
Sbjct: 182 KPVVCARCHSLRHYGKVKDPTVENLLP---EFDFDHTVGRRLVSTSGTRSVVLMVVDASD 238

Query: 137 FNGSFLARVRDL----------------AGANP-IILVITKVIDLLPKETDLNCVGDWVV 179
           F+GSF  RV  +                +G  P ++LV+TK IDLLP          WV 
Sbjct: 239 FDGSFPKRVAKMVSTTIDENYTAWKMGKSGNVPRVVLVVTK-IDLLPSSLSPTRFEHWVR 297

Query: 180 EATTKKKLNVL-SVHLTSSKSLVGIAGVISEI 210
           +   +   N L SVHL SS    G+  ++ +I
Sbjct: 298 QRAREGGANKLTSVHLVSSVRDWGLKNLVDDI 329