Jatropha Genome Database

JcCB0599321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0599321.10 + phase: 0 /partial
         (108 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000839001 assembled CDS                                       118   5e-28
GSVIVT01038299001 assembled CDS                                        58   1e-09

>GSVIVT01000839001 assembled CDS
          Length = 454

 Score =  118 bits (296), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 78/104 (75%), Gaps = 4/104 (3%)

Query: 2   IDRPNEARAMYEKLQSHSSPKVSKKARQFMFSFQAMEMMKVTGSNFSPKSTGYRKYFEKF 61
           + RP+EAR MYE+LQ+H +  VSKKARQ +F FQAMEMMKVT S    K+TGY+ +FE F
Sbjct: 354 LSRPDEARVMYERLQTHPNALVSKKARQLIFGFQAMEMMKVT-SQLPLKNTGYQNFFEAF 412

Query: 62  IDDNVTNYLVEEAESRGALSEALPYMVFLVSPIFIVLFIAVQRG 105
           I+D   NY +++ E    L +ALPY++FLVSPIFIV  IA+Q+G
Sbjct: 413 IEDKA-NYSLKDNEVE--LGQALPYIIFLVSPIFIVFLIALQKG 453


>GSVIVT01038299001 assembled CDS
          Length = 43

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 34/44 (77%), Gaps = 1/44 (2%)

Query: 11 MYEKLQSHSSPKVSKKARQFMFSFQAMEMMKVTGSNFSPKSTGY 54
          MYE+LQ+H +  VSKKARQ MF FQA+EMMKVT S    K+TGY
Sbjct: 1  MYERLQTHPNALVSKKARQLMFGFQAVEMMKVT-SQLPSKNTGY 43