Jatropha Genome Database

JcCB0597261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0597261.20 + phase: 0 /partial
         (82 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014199001 assembled CDS                                       110   1e-25

>GSVIVT01014199001 assembled CDS
          Length = 457

 Score =  110 bits (275), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/85 (62%), Positives = 67/85 (78%), Gaps = 5/85 (5%)

Query: 3  SKRNHTTELGCIACEELSDVGAGKEGWLVDNPSLLCALDTHSIALANRSLILITGWDD-- 60
          ++R +TTELGCIAC ELS++GAGKE WLV+NPSL+CALDT S+ALANRS +L+ GW +  
Sbjct: 2  ARRVYTTELGCIACNELSELGAGKEAWLVENPSLICALDTDSLALANRSFVLVLGWSENG 61

Query: 61 ---GPRLKIRPNLSPIESESITALE 82
                +KIRP LS IE+E ITA+E
Sbjct: 62 DPYNSPVKIRPTLSQIETERITAVE 86