Jatropha Genome Database

JcCB0597261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0597261.10 - phase: 0 /partial
         (180 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014198001 assembled CDS                                       197   2e-51

>GSVIVT01014198001 assembled CDS
          Length = 527

 Score =  197 bits (501), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 125/190 (65%), Gaps = 17/190 (8%)

Query: 2   AQDLSFSKALTPNVSLFPQRP-----KTLVLKPQLLFTP--SLSHQNASFRRETRAFAGR 54
            Q+LSF K L P ++    +P     K+L L P   F    SL+H+N       RA AGR
Sbjct: 3   TQNLSFPKTLNPPLTSSFTKPPHPHSKSLTLIPSPKFPKPISLNHRN------VRALAGR 56

Query: 55  SKNKQGP----RIDLDPGYLXXXXXXXXXXXXXLSESLFYRIKNPHKIHADNFTEEELNL 110
           SK   G     RI+                   L+ESLFYR+KNPH+ +ADNF+EEEL +
Sbjct: 57  SKKSPGGPSPGRIEGGAEVRREAKRNARRKMQKLAESLFYRLKNPHRNYADNFSEEELQM 116

Query: 111 IGLGYDRMVRFMEKDDPNLKHPYDWYKYGEFGPYSWRGVVLGDPIAGRFTDERVTLYSEV 170
           IGLGYDRMVRFMEKDDPNL+HPYDWYKYGEFGPYSWRG+VLGDPI GR +DE VTL  EV
Sbjct: 117 IGLGYDRMVRFMEKDDPNLRHPYDWYKYGEFGPYSWRGIVLGDPIRGRMSDECVTLIGEV 176

Query: 171 KDQEEWEKIE 180
           +DQEEWEKIE
Sbjct: 177 RDQEEWEKIE 186