Jatropha Genome Database

JcCB0590911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590911.10 - phase: 0 /partial
         (60 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032990001 assembled CDS                                       115   4e-27

>GSVIVT01032990001 assembled CDS
          Length = 685

 Score =  115 bits (288), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/60 (90%), Positives = 55/60 (91%)

Query: 1   AVDGQHLILHPLNMKCLLHHYGSYDMLPQRINGTILQLETVTQSEAMRRRYRYLSHFSLT 60
           AVDGQHLILHPLNMKCLLHHYG Y  LP RI+G ILQLETVTQSEAMRRRYRYLSHFSLT
Sbjct: 440 AVDGQHLILHPLNMKCLLHHYGGYAFLPNRISGRILQLETVTQSEAMRRRYRYLSHFSLT 499