Jatropha Genome Database

JcCB0590851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590851.10 - phase: 0 /partial
         (59 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013279001 assembled CDS                                        50   2e-07
GSVIVT01018327001 assembled CDS                                        45   5e-06

>GSVIVT01013279001 assembled CDS
          Length = 540

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 1   EARRAAERAYDVAKVDEXXXXXXXXXXXXXXXXXXXXXXXXQKQMHHNSNNDNIPIPIV 59
           EARRAAE+A+DV+KVDE                        QK++HHNS++ + P+PIV
Sbjct: 482 EARRAAEKAFDVSKVDERVNKAVALANKAANAARVAAVKAVQKRVHHNSDSSDTPLPIV 540


>GSVIVT01018327001 assembled CDS
          Length = 238

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 33/59 (55%)

Query: 1   EARRAAERAYDVAKVDEXXXXXXXXXXXXXXXXXXXXXXXXQKQMHHNSNNDNIPIPIV 59
           EARRAAE+AYDV KVDE                        QKQ+H NSNN+NIPIP+V
Sbjct: 180 EARRAAEKAYDVTKVDERVNRAVAAANRAANAARVAAIKAVQKQIHQNSNNNNIPIPMV 238