Jatropha Genome Database

JcCB0590711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590711.10 + phase: 0 /partial
         (256 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035560001 assembled CDS                                       397   e-111
GSVIVT01032958001 assembled CDS                                       267   4e-72

>GSVIVT01035560001 assembled CDS
          Length = 1006

 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/232 (83%), Positives = 210/232 (90%), Gaps = 2/232 (0%)

Query: 1   INKLAAVRINGMVERLQQSQQHIRENVYHLFQQILSQRTSLFFNRHIDQIILCCFYGVAK 60
           I KLAAVRINGMVERLQ SQQ +RENVY LFQQIL++RTSLFFNRHIDQIILCCFYG+AK
Sbjct: 734 IIKLAAVRINGMVERLQLSQQ-MRENVYCLFQQILNRRTSLFFNRHIDQIILCCFYGLAK 792

Query: 61  ISKVNLTFREIIFNYRKQPQCKPQVFRSVFIDWSSARHNGRTGQDHVDIITFYNEIFIPA 120
           IS++NLTFREII NYRKQPQCKPQ+FRSVF+DWSSAR NG+TG++HVDIITFYNEIFIPA
Sbjct: 793 ISQMNLTFREIIHNYRKQPQCKPQIFRSVFVDWSSARRNGKTGKEHVDIITFYNEIFIPA 852

Query: 121 AKPLLVEV-GSAGAITKASPTPEVNNNKDGQCPASPKVSPFPSLPDMSPKKVSATHNVYV 179
            KPLL+E+    G  TK +  PEVNNN D QCP SPK+SPFPSLPDMSPKKVSA HNVYV
Sbjct: 853 VKPLLMEIGPGGGTTTKTNRVPEVNNNNDAQCPESPKISPFPSLPDMSPKKVSAAHNVYV 912

Query: 180 SPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRG 231
           SPLR+SKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLN  RK+RG
Sbjct: 913 SPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSTRKLRG 964


>GSVIVT01032958001 assembled CDS
          Length = 588

 Score =  267 bits (682), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 137/230 (59%), Positives = 170/230 (73%), Gaps = 3/230 (1%)

Query: 1   INKLAAVRINGMVERLQQSQQHIRENVYHLFQQILSQRTSLFFNRHIDQIILCCFYGVAK 60
           + KLAAVRIN +  RL+  Q  IRE VY LF +IL+Q+T+L FNRH+DQIILCCFY + K
Sbjct: 339 VAKLAAVRINHLTLRLKPLQP-IREIVYGLFHRILNQKTALCFNRHVDQIILCCFYIIVK 397

Query: 61  ISKVNLTFREIIFNYRKQPQCKPQVFRSVFIDWSSARHNGRTGQDHVDIITFYNEIFIPA 120
            SK+ LTF+EI  +Y KQPQ  PQV   VF++ S A  NG+  +DH+DI+ FYNEIF+ A
Sbjct: 398 DSKLELTFKEIKDSYVKQPQHGPQVVSHVFVNRSPAHGNGKNREDHIDIVAFYNEIFLWA 457

Query: 121 AKPLLVEVGSAGAITKASPTPEVNNNKDGQCPASPKVSPFPSLPDMSPKKVSATHNVYVS 180
            KPLLVEV  A  ++  +P  E  NN D +CP SP++SPFPS+PD+SPKKVS +HNVY+S
Sbjct: 458 VKPLLVEVRPA-KVSDQAPD-EAANNADDECPGSPRISPFPSIPDLSPKKVSPSHNVYLS 515

Query: 181 PLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVR 230
            L+ SK +ALIS  +KSYYAC GEST AYQSPSKDLT INN L    K+R
Sbjct: 516 SLQPSKKEALISRGAKSYYACFGESTRAYQSPSKDLTTINNCLRSRPKLR 565