Jatropha Genome Database

JcCB0590701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590701.10 - phase: 0 /pseudo
         (104 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028079001 assembled CDS                                       108   4e-25
GSVIVT01035047001 assembled CDS                                       107   8e-25
GSVIVT01031205001 assembled CDS                                       107   8e-25
GSVIVT01031260001 assembled CDS                                        91   8e-20

>GSVIVT01028079001 assembled CDS
          Length = 529

 Score =  108 bits (271), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/67 (76%), Positives = 56/67 (83%)

Query: 1  MSLRPSARTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGLXXXXXXX 60
          MSLRPSARTEVRRN+YKVAVDA+EGRRRREDN+VEIRKNKREE+LQKKRREGL       
Sbjct: 1  MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREESLQKKRREGLQAQQFTT 60

Query: 61 XXLTSSF 67
              S+F
Sbjct: 61 PVSASTF 67


>GSVIVT01035047001 assembled CDS
          Length = 529

 Score =  107 bits (268), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/53 (92%), Positives = 53/53 (100%)

Query: 1  MSLRPSARTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGL 53
          MSLRPSARTEVRRN+YKVAVDA+EGRRRREDNMVEIRK+KREE+LQKKRREGL
Sbjct: 1  MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGL 53


>GSVIVT01031205001 assembled CDS
          Length = 527

 Score =  107 bits (268), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/76 (69%), Positives = 63/76 (82%), Gaps = 5/76 (6%)

Query: 1  MSLRPSARTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGLXXXXXXX 60
          MSLRPSARTEVRRN+YKV+VDA+EGRRRREDNMVEIRKN+REE+LQKKRREGL       
Sbjct: 1  MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGL-----QA 55

Query: 61 XXLTSSFTNSANDKKV 76
            L +S  ++A +KK+
Sbjct: 56 QTLPASIHSAAVEKKL 71


>GSVIVT01031260001 assembled CDS
          Length = 535

 Score = 91.3 bits (225), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/53 (75%), Positives = 46/53 (86%)

Query: 1  MSLRPSARTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGL 53
          MSLRP +RT+VR+  YK  VDA+E RRRREDN+VEIRKNKRE+NL KKRREGL
Sbjct: 1  MSLRPGSRTDVRKKSYKTGVDAEEARRRREDNLVEIRKNKREDNLLKKRREGL 53