Jatropha Genome Database

JcCB0589561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0589561.10 - phase: 2 /partial
         (292 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015147001 assembled CDS                                       355   1e-98

>GSVIVT01015147001 assembled CDS
          Length = 323

 Score =  355 bits (911), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 169/176 (96%), Positives = 173/176 (98%)

Query: 117 NSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKQPVVGVGC 176
           NSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKM  PVVGVGC
Sbjct: 86  NSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMNSPVVGVGC 145

Query: 177 ASTGDTSAALSAYCASAGIPSIVFLPVNKISMAQLVQPIANGAFVLSIDTDFDGCMKLIR 236
           ASTGDTSAALSAYCASAGIPSIVFLP N+IS+AQLVQPIANGAFVLSIDTDFDGCMKLIR
Sbjct: 146 ASTGDTSAALSAYCASAGIPSIVFLPANRISIAQLVQPIANGAFVLSIDTDFDGCMKLIR 205

Query: 237 EVTAELPIYLANSLNSLRLEGQKTAAIEILQQFNWEVPDWVIVPGGNLGNIYAFYK 292
           EVT+ELPIYLANSLNSLRLEGQKTAAIEILQQF+WEVPDWVIVPGGNLGNIYAFYK
Sbjct: 206 EVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYK 261