Jatropha Genome Database

JcCB0588921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0588921.10 - phase: 0 /pseudo/partial
         (179 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015509001 assembled CDS                                       149   5e-37

>GSVIVT01015509001 assembled CDS
          Length = 660

 Score =  149 bits (377), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 84/114 (73%), Gaps = 1/114 (0%)

Query: 66  RLQQNWKVKRQRVAAIAPGNEGFTIDLFDNSLYDSASLFRPTSLSTIRIDHDSAGMLAID 125
           RLQQNWKVKRQRVAA APGNEGF+IDLF NSL+D  ++FRP+SLST+R+DHDSAGMLA+ 
Sbjct: 161 RLQQNWKVKRQRVAASAPGNEGFSIDLFSNSLHDPVAVFRPSSLSTVRVDHDSAGMLAVH 220

Query: 126 LPPKSCRSLHFGFLGVHSNEDVXXXXXXXXXXXVEHPSKETEKESASDNESIKE 179
           LPP SCR+LHFGFLG H                 E PSKE  K+  SDNE +KE
Sbjct: 221 LPPNSCRALHFGFLGGHLGNIPKEPSKTKTYGPDELPSKEI-KKPLSDNECVKE 273