Jatropha Genome Database
- JcCB0587121.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0587121.10 - phase: 2 /pseudo/partial
(259 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01008234001 assembled CDS 146 1e-35
GSVIVT01011962001 assembled CDS 87 1e-17
GSVIVT01036449001 assembled CDS 77 1e-14
GSVIVT01020666001 assembled CDS 66 1e-11
GSVIVT01021167001 assembled CDS 65 3e-11
GSVIVT01014236001 assembled CDS 64 6e-11
GSVIVT01021528001 assembled CDS 61 7e-10
GSVIVT01008109001 assembled CDS 55 4e-08
GSVIVT01032911001 assembled CDS 54 6e-08
>GSVIVT01008234001 assembled CDS
Length = 366
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/263 (41%), Positives = 137/263 (52%), Gaps = 58/263 (22%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSSGGIPNYXXX 60
A+GPRDRRMRLSL++AR+FFDLQD L FDKASKTVEWLL +A+SAIK+LS GG
Sbjct: 148 ARGPRDRRMRLSLEIARKFFDLQDMLGFDKASKTVEWLLIKAKSAIKELSRGG------- 200
Query: 61 XXXXXXXXXXXXXXXXGNDESAAIKATIAKGKPSSSSFLNNKGVKKAKTLRKTVFHPLXX 120
+I+KGK S L + +K + RK F PL
Sbjct: 201 --------------------------SISKGK--RSKCLTKE--RKTRQSRKNAFQPLAR 230
Query: 121 XXXXXXXXXXXXXXXXKLWNRKLDESKPCEEGRDQELNQL-SICDQESGNNTINN----- 174
K+W+R+LDESK C E +LN L SI E+G + +
Sbjct: 231 ESREKARARARERTREKMWSRRLDESKVCAEANSHDLNHLGSISSFETGEESGSQSHNLI 290
Query: 175 PSLIMQLAHEVEAPSSHGQDHHPLVTIANTTTAESMNMIDDSLVIMEK-WNPSSPMINYL 233
PSL +L EVE PSS+ Q HH +T A M+D+SLVIM K W+PSS + NYL
Sbjct: 291 PSL--ELLPEVEEPSSNEQ-HHSGITEA---------MLDNSLVIMSKQWSPSS-IFNYL 337
Query: 234 YNTGMPQEHQVTDLQSFCXSWEA 256
N G+ QE Q Q WEA
Sbjct: 338 -NFGISQEPQFPGFQFHGKPWEA 359
>GSVIVT01011962001 assembled CDS
Length = 404
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSSGGIPNYXXX 60
AQGPRDRRMRLSL++AR+FFDLQD L FDKASKT+EWL ++++AIK+L +G +P
Sbjct: 75 AQGPRDRRMRLSLQIARKFFDLQDILGFDKASKTIEWLFTKSKAAIKEL-TGNLPQIKHI 133
Query: 61 XXXXXXXXXXXXXXXXGNDESAAIKATIAKGKP------SSSSFLNNKGVKKAKTLR-KT 113
S +K G+P SS L KK + R K+
Sbjct: 134 GGGGTSGGTSASSISESKGTS-RLKEIAHNGEPKGIVTNGESSVLTTPKEKKNRKPRSKS 192
Query: 114 VFHPLXXXXXXXXXXXXXXXXXXKLWNRKLDESKPCEEGRDQEL 157
+PL K+ R L++SK C E L
Sbjct: 193 ALNPLAKESREKARARARERTREKMIMRSLEKSKQCSEANPNNL 236
>GSVIVT01036449001 assembled CDS
Length = 273
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 46/49 (93%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKL 49
A+GPR+RR+RLS+K+AR+FFDLQD L FDKAS+T+EWLL ++++AIK++
Sbjct: 81 AKGPRERRVRLSIKIARKFFDLQDMLGFDKASRTLEWLLMKSKTAIKEV 129
>GSVIVT01020666001 assembled CDS
Length = 307
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 41/50 (82%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLS 50
A+GPRDRR+RLS A +F+D+QD+L +D+ SK V+WL+ +A+S+I KL+
Sbjct: 33 AKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLA 82
>GSVIVT01021167001 assembled CDS
Length = 382
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 41/50 (82%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLS 50
++GPRDRR+RLS A +F+D+QD+L +D+ SK V+WL+++A++AI L+
Sbjct: 77 SKGPRDRRVRLSANTAIQFYDVQDRLGYDRPSKAVDWLMEKAKTAIDALA 126
>GSVIVT01014236001 assembled CDS
Length = 300
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 41/50 (82%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLS 50
A+GPRDRR+RLS A +F+D+QD+L +D+ SK V+WL+ +A++AI +L+
Sbjct: 54 AKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELA 103
>GSVIVT01021528001 assembled CDS
Length = 319
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSS 51
++G RDRR+RLS+ A +F+DLQD+L +D+ SK VEWL+ A AI +L S
Sbjct: 61 SKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPS 111
>GSVIVT01008109001 assembled CDS
Length = 217
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSSGGIP 55
+G RDRR+RLS+ A + +DLQD+L + SK V+WLLD + I KL IP
Sbjct: 121 VRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDATKHEIDKLPPLQIP 175
>GSVIVT01032911001 assembled CDS
Length = 465
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 1 AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSSGGIP 55
+G RDRR+RLS+ A + +DLQD+L ++ SK V+WLL+ A+ I +L +P
Sbjct: 148 VRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLQMP 202