Jatropha Genome Database

JcCB0585631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0585631.10 + phase: 2 /TE/partial
         (322 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028137001 assembled CDS                                        69   4e-12
GSVIVT01016847001 assembled CDS                                        50   1e-06
GSVIVT01007665001 assembled CDS                                        48   6e-06

>GSVIVT01028137001 assembled CDS
          Length = 771

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query: 260 VKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKP 319
           + K K E +  +DHS I+Y+PF K+FY E   IS MT ++V  YRK L +++ G DVP+P
Sbjct: 165 LDKKKIEPIPALDHSSIEYEPFNKDFYEEKDSISGMTEQDVTEYRKSLSIRVSGFDVPRP 224

Query: 320 VKT 322
           +KT
Sbjct: 225 IKT 227


>GSVIVT01016847001 assembled CDS
          Length = 506

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 280 PFRKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKPV 320
           PF KNFY+E   ++ M+ +EV  YR++ E+ + G+DVPKPV
Sbjct: 59  PFEKNFYVESPAVAAMSEKEVEQYRERREITVEGRDVPKPV 99


>GSVIVT01007665001 assembled CDS
          Length = 611

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 280 PFRKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKPVK 321
           PF KNFYIE   +  M+ +E   YR + E+ + G DVPKP++
Sbjct: 255 PFEKNFYIESPSVQAMSEQEAMLYRARREITVEGYDVPKPIR 296