Jatropha Genome Database

JcCB0584071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0584071.10 - phase: 1 /pseudo/partial
         (304 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020612001 assembled CDS                                       197   4e-51
GSVIVT01025166001 assembled CDS                                        51   6e-07
GSVIVT01025658001 assembled CDS                                        51   7e-07
GSVIVT01031112001 assembled CDS                                        49   3e-06

>GSVIVT01020612001 assembled CDS
          Length = 427

 Score =  197 bits (502), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 133/275 (48%), Positives = 161/275 (58%), Gaps = 56/275 (20%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAASTNFNYHLMGAPIGPNNMAQHFSSIFK 88
           RRDSFITHRAFCDALAEETARV AA++IN    +   NYH MG  + P +M QHFSSIFK
Sbjct: 170 RRDSFITHRAFCDALAEETARVTAASNIN----NGTINYHFMGTSLAP-SMPQHFSSIFK 224

Query: 89  PISSSNDQQTIDQTRRGLPLWVSQGPQGHEAIINNSIQEIHRQLGSLTSSGTIFGQDPLV 148
           PI SSND+ T DQTRRGL LW+ QG QGHE +  N +QEIH                   
Sbjct: 225 PI-SSNDEAT-DQTRRGLSLWMGQGSQGHETMGTN-LQEIH------------------- 262

Query: 149 SSSDQYHQINWPKIFGNNKQISSNNVHQEELTSTTSLPLNE----AAVQLASVPSLYSGX 204
                       ++  +    SS+N  +++LTS+TSLPL+     A  Q+ SVPSLYS  
Sbjct: 263 ------------QLRSSMSPGSSSNNTEDQLTSSTSLPLSNVKEAAGSQIVSVPSLYS-- 308

Query: 205 XXXXXXXXXXXXXXXXXXXLLQKAAQIGATSTDPSFLGSFGLKCSSNGQIQEGNKFCGLY 264
                              LLQKAAQ+GATS DP FLGSFGLKC S+  +Q+GNKFCGLY
Sbjct: 309 --SQHHSHQTPLGNMSATALLQKAAQMGATSADP-FLGSFGLKCDSS-LVQDGNKFCGLY 364

Query: 265 GANNL---DL----DLVLDHQMQMFPATKTAKSND 292
            AN L   D+    DL   +Q+QM+PA +    ND
Sbjct: 365 TANQLPTNDMENPKDLSTFNQLQMYPAKRRNTQND 399


>GSVIVT01025166001 assembled CDS
          Length = 477

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSL-------AASTNFNYHLM---GAPIGPNN 78
           R+DSFITHRAFCDALAEE+AR+ + ++ N +        + +N   H++    +P  P  
Sbjct: 175 RKDSFITHRAFCDALAEESARLTSVSAPNPIFRNELMNGSISNPQAHIIPQFSSPRLPLW 234

Query: 79  MAQHFSSIFKPISSSNDQQTIDQTRRGLPLWVSQGP 114
           +    S +  PI  + +   +  T  GLP  V   P
Sbjct: 235 LDHANSHLNNPIGVNTNGSFLAPTSAGLPEMVQTAP 270


>GSVIVT01025658001 assembled CDS
          Length = 469

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 7/39 (17%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAASTNFNY 67
           R+DSFITHRAFCDALAEE AR+   TS+    A+TN N+
Sbjct: 176 RKDSFITHRAFCDALAEERARI---TSV----AATNLNF 207


>GSVIVT01031112001 assembled CDS
          Length = 513

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/23 (86%), Positives = 21/23 (91%)

Query: 29  RRDSFITHRAFCDALAEETARVN 51
           RRDSFITHRAFCDALAEE  +VN
Sbjct: 200 RRDSFITHRAFCDALAEENTKVN 222