Jatropha Genome Database

JcCB0582541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0582541.10 - phase: 0 /partial
         (98 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026984001 assembled CDS                                       140   1e-34
GSVIVT01019406001 assembled CDS                                       140   1e-34
GSVIVT01025091001 assembled CDS                                       132   3e-32
GSVIVT01025105001 assembled CDS                                       115   5e-27
GSVIVT01038192001 assembled CDS                                       103   2e-23
GSVIVT01011749001 assembled CDS                                        63   3e-11
GSVIVT01014081001 assembled CDS                                        62   4e-11
GSVIVT01017873001 assembled CDS                                        60   2e-10
GSVIVT01008408001 assembled CDS                                        59   3e-10

>GSVIVT01026984001 assembled CDS
          Length = 375

 Score =  140 bits (353), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 79/96 (82%)

Query: 3  DGNAGGQYGDFPVIPTHCGQFVQYNIFGNLFEITSKYRPPIMPIGRGAYGIVCSVLNSET 62
          + +AG   G+   + TH G++VQYN++GNLFE++ KY PPI P+GRGAYGIVC+ +NSET
Sbjct: 4  ESSAGSVEGNIRGVSTHGGRYVQYNVYGNLFEVSRKYVPPIRPVGRGAYGIVCAAMNSET 63

Query: 63 NEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHEN 98
           E VA+KKI NAFDN +DAKRTLREIKLLRH+DHEN
Sbjct: 64 REEVAIKKIGNAFDNRIDAKRTLREIKLLRHMDHEN 99


>GSVIVT01019406001 assembled CDS
          Length = 375

 Score =  140 bits (353), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 80/98 (81%)

Query: 1   MADGNAGGQYGDFPVIPTHCGQFVQYNIFGNLFEITSKYRPPIMPIGRGAYGIVCSVLNS 60
           M   +  G  G+   +PTH G++V+YN++GN FE+++KY PPI P+GRGAYGIVC+ +NS
Sbjct: 3   MDASSGSGDGGNIKGVPTHGGRYVRYNVYGNFFEVSAKYVPPIRPVGRGAYGIVCAAVNS 62

Query: 61  ETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHEN 98
           ET+E VA+KKI NAFDN +DAKRTLREIKLLRH+DHEN
Sbjct: 63  ETHEEVAIKKIGNAFDNRIDAKRTLREIKLLRHMDHEN 100


>GSVIVT01025091001 assembled CDS
          Length = 371

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 72/83 (86%)

Query: 16 IPTHCGQFVQYNIFGNLFEITSKYRPPIMPIGRGAYGIVCSVLNSETNEMVAVKKIANAF 75
          +P++ G++VQYN+ GNLFE+++KY PPI P+GRGAYGIVC   NSETN+ VA+KKI NAF
Sbjct: 13 VPSYGGKYVQYNVLGNLFEVSAKYVPPIQPVGRGAYGIVCCATNSETNKEVAIKKIGNAF 72

Query: 76 DNHMDAKRTLREIKLLRHLDHEN 98
          DN +DAKRTLREIKLL H+DHEN
Sbjct: 73 DNRIDAKRTLREIKLLCHMDHEN 95


>GSVIVT01025105001 assembled CDS
          Length = 329

 Score =  115 bits (287), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/55 (98%), Positives = 55/55 (100%)

Query: 44 MPIGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHEN 98
          MPIGRGAYGIVCSVLNSETNEMVA+KKIANAFDNHMDAKRTLREIKLLRHLDHEN
Sbjct: 1  MPIGRGAYGIVCSVLNSETNEMVAIKKIANAFDNHMDAKRTLREIKLLRHLDHEN 55


>GSVIVT01038192001 assembled CDS
          Length = 330

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/55 (87%), Positives = 52/55 (94%)

Query: 44 MPIGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHEN 98
          MPIG+GAYGIVCS LNSETNE VA+KKIANAFDN +DAKRTLREIKLLRH+DHEN
Sbjct: 1  MPIGKGAYGIVCSALNSETNEHVALKKIANAFDNKIDAKRTLREIKLLRHMDHEN 55


>GSVIVT01011749001 assembled CDS
          Length = 613

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 46  IGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDH 96
           +G+G+YG+V S +N+ T E VA+KKI + F+N  DA R LREIKLLR L H
Sbjct: 119 VGKGSYGVVASAVNTHTGERVAIKKINDVFENVSDATRILREIKLLRLLRH 169


>GSVIVT01014081001 assembled CDS
          Length = 598

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 46 IGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHEN 98
          +G+G+YG+VCS +++ T E VA+KKI + F++  DA R LREIKLLR L H +
Sbjct: 31 VGKGSYGVVCSAIDTHTGEKVAIKKINDIFEHISDAIRILREIKLLRLLRHPD 83


>GSVIVT01017873001 assembled CDS
          Length = 563

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%)

Query: 46 IGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHEN 98
          IG+G+YG+VCS  ++   E VA+KKI + F++  DA R LREIKLLR L H +
Sbjct: 31 IGKGSYGVVCSAYDTHCGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPD 83


>GSVIVT01008408001 assembled CDS
          Length = 601

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 39/53 (73%)

Query: 46  IGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHEN 98
           +G+G+YG+V S +++ T E VA+KKI + F++  DA R LREIKLLR L H +
Sbjct: 116 VGKGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPD 168