Jatropha Genome Database

JcCB0582451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0582451.10 + phase: 1 /partial
         (229 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032478001 assembled CDS                                       301   2e-82
GSVIVT01016534001 assembled CDS                                        70   7e-13
GSVIVT01000415001 assembled CDS                                        61   3e-10
GSVIVT01019372001 assembled CDS                                        60   1e-09

>GSVIVT01032478001 assembled CDS
          Length = 421

 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 152/236 (64%), Positives = 177/236 (75%), Gaps = 14/236 (5%)

Query: 5   TEGGSIAGEPGSEAHVGYTFCGLAAMVLINEVNRLDMARLIDWVVFRQGVECGFQGRTNK 64
           T  G I+GEPGSEAH GYTFCGLA MVLI EVNRLD+  LIDWVVFRQGVE GFQGRTNK
Sbjct: 188 TYEGGISGEPGSEAHGGYTFCGLATMVLIGEVNRLDLTSLIDWVVFRQGVEGGFQGRTNK 247

Query: 65  LVDGCYSFWQGGVFAILQRLRSVSGEGVAFSDAEAGDYATDSTSEGEV-----------T 113
           LVDGCYSFWQGGVFA++Q+L S+  E +   DA  G  A DS     +           T
Sbjct: 248 LVDGCYSFWQGGVFALIQKLHSIIEEQLRLLDA--GGSAIDSPQLASISCHSGKRGLHDT 305

Query: 114 NGNSSEADEPDHFKQGDHGEMVPPFHSMALQQYILLCSQEQDGGFRDKPGKARDFYHTCY 173
           +G++  ++   +F + +  EM P FHS+ALQQYI+LCSQ Q+GGFRDKPGK RD+YHTCY
Sbjct: 306 SGSAKFSNIGFNFLK-EPAEMEPLFHSIALQQYIILCSQLQEGGFRDKPGKHRDYYHTCY 364

Query: 174 CLSGLSVCQYSWSKDEHSPPPTRAVLGPYSNLLEPVHPLYNVVLKQYHEARDFFSS 229
           CLSGLSV QYS+SKD  SPP  RAV GPYSNLLEP+HPLYNV+L  YHEA +FFS+
Sbjct: 365 CLSGLSVAQYSYSKDADSPPLPRAVFGPYSNLLEPIHPLYNVILDLYHEAHEFFST 420


>GSVIVT01016534001 assembled CDS
          Length = 351

 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 71/180 (39%), Gaps = 63/180 (35%)

Query: 14  PGSEAHVGYTFCGLAAMVLINEVNR-----------LDMARLIDWVVFRQGVECGFQGRT 62
           PGSE+H G T+C +A++ L+  +             +++  L+DW + RQ  + GFQGR 
Sbjct: 203 PGSESHGGGTYCAVASLQLMGFIEHDILSKSSSSSIINVPLLLDWSLQRQAADGGFQGRA 262

Query: 63  NKLVDGCYSFWQGGVFAILQRLRSVSGEGVAFSDAEAGDYATDSTSEGEVTNGNSSEADE 122
           NK  D CY+FW GGV  IL   + +                                   
Sbjct: 263 NKASDTCYAFWVGGVLRILGGYKLID---------------------------------- 288

Query: 123 PDHFKQGDHGEMVPPFHSMALQQYILLCSQEQDGGFRDKPGKARDFYHTCYCLSGLSVCQ 182
               K+  HG               LL  Q Q GGF   PG+  D YH+ Y  S  S+ +
Sbjct: 289 ----KKALHG--------------FLLTCQSQYGGFSKFPGQLPDLYHSYYGFSAFSMLE 330


>GSVIVT01000415001 assembled CDS
          Length = 317

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 63/208 (30%)

Query: 8   GSIAGEPGSEAHVGYTFCGLAAMVLINEVNRLDMARLIDWVVFRQGVECGFQGRTNKLVD 67
           G     PG+E+H G  FC + A+ L   ++ +D   L  W+  RQ    G  GR  KL D
Sbjct: 169 GGFGCTPGAESHAGQIFCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD 228

Query: 68  GCYSFWQGGVFAILQRLRSVSGEGVAFSDAEAGDYATDSTSEGEVTNGNSSEADEPDHFK 127
            CYS+W      ++ R   +  +                                     
Sbjct: 229 VCYSWWVLSSLIMIDRAHWIDKD------------------------------------- 251

Query: 128 QGDHGEMVPPFHSMALQQYILLCSQEQDGGFRDKPGKARDFYHTCYCLSGLSVCQYSWSK 187
                          L ++I+ C   ++GG  D+P  A D +HT + ++GLS+ +Y    
Sbjct: 252 --------------KLIKFIIDCQDRENGGISDRPDDAVDVFHTYFGVAGLSLLEY---- 293

Query: 188 DEHSPPPTRAVLGPYSNLLEPVHPLYNV 215
                P  +AV   Y+    PVH +  +
Sbjct: 294 -----PGVKAVDPAYA---LPVHVVNRI 313


>GSVIVT01019372001 assembled CDS
          Length = 317

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 60/206 (29%)

Query: 8   GSIAGEPGSEAHVGYTFCGLAAMVLINEVNRLDMARLIDWVVFRQGVECGFQGRTNKLVD 67
           G     PG+E+H G  FC ++A+ L   ++ +D   L  W+  RQ       GR  KL D
Sbjct: 169 GGFGCTPGAESHAGQIFCCVSALALTGSLHHVDKDLLGWWLCERQVKSGALNGRPEKLPD 228

Query: 68  GCYSFWQGGVFAILQRLRSVSGEGVAFSDAEAGDYATDSTSEGEVTNGNSSEADEPDHFK 127
            CYS+W      ++ R   +  E                                     
Sbjct: 229 VCYSWWVLSSLIMIDRAHWIDKE------------------------------------- 251

Query: 128 QGDHGEMVPPFHSMALQQYILLCSQEQDGGFRDKPGKARDFYHTCYCLSGLSVCQYSWSK 187
                          L ++IL C  +++GG  D+P  A D +HT + ++GL+  +Y    
Sbjct: 252 --------------KLIKFILDCQDKENGGISDRPDDAVDVFHTYFGVAGLAHLEY---- 293

Query: 188 DEHSPPPTRAVLGPYSNLLEPVHPLY 213
                P  +AV   Y+  ++ V+ ++
Sbjct: 294 -----PGLKAVDPAYALPVDVVNRIF 314