Jatropha Genome Database

JcCB0582281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0582281.10 - phase: 0 
         (84 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007804001 assembled CDS                                        91   1e-19
GSVIVT01015359001 assembled CDS                                        74   2e-14
GSVIVT01020653001 assembled CDS                                        73   2e-14
GSVIVT01024029001 assembled CDS                                        72   4e-14
GSVIVT01009947001 assembled CDS                                        71   1e-13
GSVIVT01018319001 assembled CDS                                        64   1e-11
GSVIVT01018729001 assembled CDS                                        63   3e-11

>GSVIVT01007804001 assembled CDS
          Length = 210

 Score = 90.5 bits (223), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 43/46 (93%)

Query: 18  LREDKHYLADHPGLVAVTTAQGEELRKQIGAAYYIECSSKTQQVCK 63
           LREDKHYLADHPGLV VTTAQGEELRKQIGAAYYIECSSKTQQ  K
Sbjct: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVK 169


>GSVIVT01015359001 assembled CDS
          Length = 210

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 38/46 (82%)

Query: 18  LREDKHYLADHPGLVAVTTAQGEELRKQIGAAYYIECSSKTQQVCK 63
           LREDK YLADH G   +T+AQGEELRKQIGAA YIECSSKTQQ  K
Sbjct: 122 LREDKGYLADHMGSNVITSAQGEELRKQIGAAAYIECSSKTQQNVK 167


>GSVIVT01020653001 assembled CDS
          Length = 196

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 37/46 (80%)

Query: 18  LREDKHYLADHPGLVAVTTAQGEELRKQIGAAYYIECSSKTQQVCK 63
           LREDK +L DHPG   +TTAQGE+L+K IGAA YIECSSKTQQ  K
Sbjct: 122 LREDKQFLIDHPGATPITTAQGEDLKKMIGAAVYIECSSKTQQNVK 167


>GSVIVT01024029001 assembled CDS
          Length = 198

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 36/46 (78%)

Query: 18  LREDKHYLADHPGLVAVTTAQGEELRKQIGAAYYIECSSKTQQVCK 63
           LR+DK +  DHPG V +TTAQGEELRK IGA  YIECSSKTQQ  K
Sbjct: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVK 167


>GSVIVT01009947001 assembled CDS
          Length = 197

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 36/46 (78%)

Query: 18  LREDKHYLADHPGLVAVTTAQGEELRKQIGAAYYIECSSKTQQVCK 63
           LR+DK +  DHPG V +TTAQGEEL+K IGA  YIECSSKTQQ  K
Sbjct: 122 LRDDKQFFVDHPGAVPITTAQGEELKKVIGAPAYIECSSKTQQNVK 167


>GSVIVT01018319001 assembled CDS
          Length = 198

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 18  LREDKHYLADHPGLVAVTTAQGEELRKQIGAAYYIECSSKTQQVCK 63
           LREDK +  D+PG   ++T QGEEL+KQIGA  YIECSSKTQQ  K
Sbjct: 124 LREDKQFHMDYPGACTISTEQGEELKKQIGALAYIECSSKTQQNVK 169


>GSVIVT01018729001 assembled CDS
          Length = 196

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 34/46 (73%)

Query: 18  LREDKHYLADHPGLVAVTTAQGEELRKQIGAAYYIECSSKTQQVCK 63
           LREDK +  DHPG V ++ AQGEEL++ I A  YIECS+KTQQ  K
Sbjct: 122 LREDKQFFIDHPGAVPISAAQGEELKRLIDAPAYIECSAKTQQNIK 167