Jatropha Genome Database

JcCB0581961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0581961.10 - phase: 0 /pseudo/partial
         (257 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027147001 assembled CDS                                       436   e-123
GSVIVT01019546001 assembled CDS                                       434   e-122
GSVIVT01018380001 assembled CDS                                       377   e-105
GSVIVT01013218001 assembled CDS                                       373   e-104
GSVIVT01011654001 assembled CDS                                       369   e-103
GSVIVT01012532001 assembled CDS                                       108   3e-24
GSVIVT01036006001 assembled CDS                                       105   1e-23
GSVIVT01037193001 assembled CDS                                       104   5e-23
GSVIVT01023155001 assembled CDS                                        96   1e-20

>GSVIVT01027147001 assembled CDS
          Length = 614

 Score =  436 bits (1122), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 203/235 (86%), Positives = 224/235 (95%)

Query: 16  GERTLGVLTKIDLMDKGTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRRER 75
           GERT GVLTKIDLMDKGTDAVDILEGK+Y+L+FPW+GVVNRSQADINK+VDMIAARRRER
Sbjct: 207 GERTFGVLTKIDLMDKGTDAVDILEGKSYKLQFPWIGVVNRSQADINKSVDMIAARRRER 266

Query: 76  EYFANSPEYKHLAHRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTIIELESELSRLGK 135
           EYF+NSPEYKHL+HRMGSEHL KMLSKHLETVIKSRIPG+QSLI+KTI ELESELSRLGK
Sbjct: 267 EYFSNSPEYKHLSHRMGSEHLGKMLSKHLETVIKSRIPGLQSLISKTIAELESELSRLGK 326

Query: 136 PIAADAGGKLYTIMEICRLFDQIYKEHLDGVRPGGEKIYNVFDNQLPAALKRLQFDKQLS 195
           PIA+DAGGKLY IMEICR FDQI+KEHLDG+RPGG+K+YNVFD+QLPAALKRLQFDKQLS
Sbjct: 327 PIASDAGGKLYMIMEICRCFDQIFKEHLDGIRPGGDKVYNVFDSQLPAALKRLQFDKQLS 386

Query: 196 MENIRKLIAEADGYQPHLIAPEQGYRRLIESSLITIRGPAEAAVDAVCMNINKLI 250
           MEN++KLI EADGYQPHLIAPEQGYRRLIESS++TIRGPAEAAVDAV   +  L+
Sbjct: 387 MENVKKLITEADGYQPHLIAPEQGYRRLIESSIVTIRGPAEAAVDAVHAILKDLV 441


>GSVIVT01019546001 assembled CDS
          Length = 609

 Score =  434 bits (1115), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/227 (90%), Positives = 219/227 (96%)

Query: 16  GERTLGVLTKIDLMDKGTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRRER 75
           GERT GVLTKIDLMDKGTDAVDILEGK+YRL+FPW+GVVNRSQADINK+VDMIAARRRER
Sbjct: 202 GERTFGVLTKIDLMDKGTDAVDILEGKSYRLQFPWIGVVNRSQADINKSVDMIAARRRER 261

Query: 76  EYFANSPEYKHLAHRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTIIELESELSRLGK 135
           EYFAN+PEYKHLAHRMGSEHL KMLSKHLE VIKSRIP IQSLINKTI+ELE+ELSRLGK
Sbjct: 262 EYFANTPEYKHLAHRMGSEHLGKMLSKHLENVIKSRIPSIQSLINKTIVELEAELSRLGK 321

Query: 136 PIAADAGGKLYTIMEICRLFDQIYKEHLDGVRPGGEKIYNVFDNQLPAALKRLQFDKQLS 195
           PIAADAGGKLY IMEI R+FDQIYKEHLDGVR GG+KIY+VFDNQLPAALKRLQFDKQLS
Sbjct: 322 PIAADAGGKLYMIMEISRVFDQIYKEHLDGVRAGGDKIYHVFDNQLPAALKRLQFDKQLS 381

Query: 196 MENIRKLIAEADGYQPHLIAPEQGYRRLIESSLITIRGPAEAAVDAV 242
           MEN+RKLI EADGYQPHLIAPEQGYRRLIESS+++IRGPAEAAVDAV
Sbjct: 382 MENVRKLITEADGYQPHLIAPEQGYRRLIESSIVSIRGPAEAAVDAV 428


>GSVIVT01018380001 assembled CDS
          Length = 619

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 210/237 (88%)

Query: 15  SGERTLGVLTKIDLMDKGTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRRE 74
           SGERT GVLTK+DLMDKGT+A+++LEG++YRL+ PWVG+VNRSQADINKNVDMI ARR+E
Sbjct: 206 SGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIVARRKE 265

Query: 75  REYFANSPEYKHLAHRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTIIELESELSRLG 134
           REYFA SP+Y HLA +MGSE+LAK+LSKHLETVI++RIP I SLINK+I ELESE+  LG
Sbjct: 266 REYFATSPDYGHLASKMGSEYLAKLLSKHLETVIRARIPSITSLINKSIDELESEMDHLG 325

Query: 135 KPIAADAGGKLYTIMEICRLFDQIYKEHLDGVRPGGEKIYNVFDNQLPAALKRLQFDKQL 194
           +PIA DAG +LYTI+E+CR FD I+KEHLDG RPGG++IY VFDNQLPAAL++L FD+ L
Sbjct: 326 RPIAVDAGAQLYTILELCRAFDCIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHL 385

Query: 195 SMENIRKLIAEADGYQPHLIAPEQGYRRLIESSLITIRGPAEAAVDAVCMNINKLIR 251
           S++N+RK+++EADGYQPHLIAPEQGYRRLIE SL   RGPAEA+VDAV   + +L+R
Sbjct: 386 SLQNVRKIVSEADGYQPHLIAPEQGYRRLIEGSLNYFRGPAEASVDAVHFVLKELVR 442


>GSVIVT01013218001 assembled CDS
          Length = 613

 Score =  373 bits (957), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 210/237 (88%)

Query: 15  SGERTLGVLTKIDLMDKGTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRRE 74
           +GERT GVLTK+DLMDKGT+A+D+LEG++YRL  PWVG+VNRSQADINKNVDMIAARRRE
Sbjct: 205 TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLLHPWVGIVNRSQADINKNVDMIAARRRE 264

Query: 75  REYFANSPEYKHLAHRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTIIELESELSRLG 134
           RE+FA SP+Y HL+ +MGSE+LAK+LSKHLE VI++RIP I SLINK+I ELE EL  LG
Sbjct: 265 REFFATSPDYGHLSSKMGSEYLAKLLSKHLEAVIRARIPSITSLINKSIDELEGELDHLG 324

Query: 135 KPIAADAGGKLYTIMEICRLFDQIYKEHLDGVRPGGEKIYNVFDNQLPAALKRLQFDKQL 194
           +PIA DAG +LYTI+E+CR FD+I+KEHL+G RPGG++IY VFDNQLP+AL++L FD+ L
Sbjct: 325 RPIAIDAGAQLYTILELCRAFDRIFKEHLEGGRPGGDRIYGVFDNQLPSALRKLPFDRHL 384

Query: 195 SMENIRKLIAEADGYQPHLIAPEQGYRRLIESSLITIRGPAEAAVDAVCMNINKLIR 251
           S++N+RK+I+EADGYQPHLIAPEQGYRRLI+SSL   RGPAEA+VDAV   + +L+R
Sbjct: 385 SLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLNYFRGPAEASVDAVHFVLKELVR 441


>GSVIVT01011654001 assembled CDS
          Length = 613

 Score =  369 bits (947), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 166/237 (70%), Positives = 211/237 (89%)

Query: 15  SGERTLGVLTKIDLMDKGTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRRE 74
           +GERT GVLTK+DLMDKGT+A+D+LEG++YRL+ PWVG+VNRSQADINKNVDMIAAR++E
Sbjct: 203 TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARQKE 262

Query: 75  REYFANSPEYKHLAHRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTIIELESELSRLG 134
           REYF +SPEY HLAH+MGSE+LAK+LS+HLE+VI+ RIP I +LINKTI EL +EL R+G
Sbjct: 263 REYFESSPEYGHLAHKMGSEYLAKLLSQHLESVIRQRIPSIIALINKTIDELNAELDRIG 322

Query: 135 KPIAADAGGKLYTIMEICRLFDQIYKEHLDGVRPGGEKIYNVFDNQLPAALKRLQFDKQL 194
           +PIA D+G +LYTI+E+CR FD+++KEHLDG R GG+KIY VFD+QLPAALK+L FD+ L
Sbjct: 323 RPIAVDSGAQLYTILEMCRAFDRVFKEHLDGGRAGGDKIYGVFDHQLPAALKKLPFDRHL 382

Query: 195 SMENIRKLIAEADGYQPHLIAPEQGYRRLIESSLITIRGPAEAAVDAVCMNINKLIR 251
           S++N+RK+++EADGYQPHLIAPEQGYRRLI+ SL   +GPAEA+VDAV   + +L+R
Sbjct: 383 SLQNVRKVVSEADGYQPHLIAPEQGYRRLIDGSLSFFKGPAEASVDAVHFVLKELVR 439


>GSVIVT01012532001 assembled CDS
          Length = 923

 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 16  GERTLGVLTKIDLMDKGTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRRER 75
           G RT+GV+TK+D+MD+GTDA ++L GK   L+  ++GVVNRSQ DI  N  +  A   E 
Sbjct: 307 GYRTIGVITKLDIMDRGTDARNLLLGKVIPLRLGYIGVVNRSQEDIIMNRSVKDALVAEE 366

Query: 76  EYFANSPEYKHLAHRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTIIELESELSRLG- 134
           ++F + P Y  LA R G   LAK L++ L   IK+ +PG++  +N  ++ +  E + +G 
Sbjct: 367 KFFRSRPVYNGLADRCGITQLAKKLNQILVQHIKTVLPGLKLRMNSALVSVAKEHASIGE 426

Query: 135 --KPIAADAGGKLYTIMEICRLFDQIYKEHLDGVR--------PGGEKIYNVFDNQLPAA 184
             +  A    G+   ++ I   + + +   ++G           GG +I+ +F +    +
Sbjct: 427 IPESKACRTAGQGALLLNILSKYAEAFSSRVEGKNEEMSTAELSGGARIHYIFQSIFVKS 486

Query: 185 LKRLQFDKQLSMENIRKLIAEADGYQPHLIAPEQGYRRLIESSLITIRGPA 235
           L+ +   + L+ ++IR  I  A G +  L  PE  +  L+   +  +  P+
Sbjct: 487 LEEVDPCEDLTDDDIRTAIQNATGPRSALFVPEVPFEVLVRRQIARLLDPS 537


>GSVIVT01036006001 assembled CDS
          Length = 697

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 15/233 (6%)

Query: 15  SGERTLGVLTKIDLMDKGTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRRE 74
           +G RT+GV+TK+D+MD+GT+A + L G    L   +VGVVNRSQ D+N+N  +  A   E
Sbjct: 135 AGTRTIGVITKLDIMDRGTNACNFLLGNIVPLSLGYVGVVNRSQEDLNQNRSISEALAYE 194

Query: 75  REYFANSPEYKHLAHRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTIIELESELSRLG 134
            ++F + P Y  L+   G   LAK L++ LE  I+  +P ++  +N  +I +  EL   G
Sbjct: 195 DQFFHDHPVYHGLSDCCGVPQLAKKLNQILEHHIRMVLPSLKDELNCHMIAVVKELQTSG 254

Query: 135 KPIAA--DAGGKLYTIM-EICRLF----DQIYKEHLDGVRPGGEKIYNVFDNQLPAALKR 187
           + + +  + G  L +I+ + C  F    D   +E       GG +I+ +F +    +L+ 
Sbjct: 255 EVVESKVEQGAVLLSILKKYCEAFSALVDGKSQEMSTRELSGGARIHYIFQSIFVKSLEE 314

Query: 188 LQFDKQLSMENIRKLIAEADGYQPHLIAPEQGYR--------RLIESSLITIR 232
           +   + L+ E+IR  I  A+G +  L  PE  ++        RL++ SL  +R
Sbjct: 315 VDPCEALTDEDIRMAIQNANGPRNALFVPEVPFQILVRRQIHRLLDPSLQCLR 367


>GSVIVT01037193001 assembled CDS
          Length = 931

 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 12/239 (5%)

Query: 16  GERTLGVLTKIDLMDK------GTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIA 69
           G RT+GV++KID             A+ + +G     + PWV ++ +S +  +     + 
Sbjct: 199 GTRTIGVISKIDQAASDQKILAAVQALLLNQGPRSTSEMPWVALIGQSVSIASAQSGSVG 258

Query: 70  ARRR-EREYFANSPEYKHL-----AHRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTI 123
           +    E  + A S   K +       ++G   L   L++ + + +K R+P + S +    
Sbjct: 259 SENSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRSRMKVRLPNLLSGLQGKS 318

Query: 124 IELESELSRLGKPIAADAGGKLYTIMEICRLFDQIYKEHLDGVRPGGEKIYNVFDNQLPA 183
             +  EL+RLG+ +   + G     +E+CR F+  +  H+ G    G K+   F+   P 
Sbjct: 319 QIVGDELARLGEQMVHSSEGTRAIALELCREFEDKFLLHIAGGEGAGWKVVASFEGNFPN 378

Query: 184 ALKRLQFDKQLSMENIRKLIAEADGYQPHLIAPEQGYRRLIESSLITIRGPAEAAVDAV 242
            +K+L  D+   + N+++++ EADGYQP+LI+PE+G R LI+  L   + P+   VD V
Sbjct: 379 RIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEV 437


>GSVIVT01023155001 assembled CDS
          Length = 920

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 12/237 (5%)

Query: 18  RTLGVLTKIDLM---DKGTDAVDIL---EGKAYRLKFPWVGVVNRSQADINKNVDMIAAR 71
           RT+GV++KID      K   AV  L   +G       PWV ++ +S +  +       + 
Sbjct: 199 RTIGVISKIDQAAGEPKILAAVQALLSNQGPRSTSDIPWVALIGQSVSIASAQSGNAGSE 258

Query: 72  RR-EREYFANSPEYKHL-----AHRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTIIE 125
              E  + A S   K +      +++G   L   L++ +   +K R+P + S +      
Sbjct: 259 NSLETAWRAESETLKSILPGAPQNKLGRVALVDALAQQIRNRMKVRLPNLLSGLQGKSQI 318

Query: 126 LESELSRLGKPIAADAGGKLYTIMEICRLFDQIYKEHLDGVRPGGEKIYNVFDNQLPAAL 185
           ++ EL RLG+ +     G     +++CR F+  + +HL      G K+   F+   P  +
Sbjct: 319 VQEELVRLGEQMVDSVEGTRAIALQLCREFEDKFLQHLAHGEGSGWKVVASFEGNFPNRI 378

Query: 186 KRLQFDKQLSMENIRKLIAEADGYQPHLIAPEQGYRRLIESSLITIRGPAEAAVDAV 242
           K+L  DK   + N+++++ EADGYQP+LI+PE+G R LI+  L   + P+   VD V
Sbjct: 379 KQLPLDKHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKIVLELAKEPSRLCVDEV 435