Jatropha Genome Database

JcCB0580221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0580221.10 + phase: 0 
         (199 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031256001 assembled CDS                                       102   1e-22
GSVIVT01034962001 assembled CDS                                        98   2e-21
GSVIVT01028151001 assembled CDS                                        51   3e-07

>GSVIVT01031256001 assembled CDS
          Length = 252

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 6/179 (3%)

Query: 2   DYKDGDFDVDLENGLRVNAEDPHKDYISVVKIQAKELLGKIYGVFV--DGTINDEEGLNL 59
           D K+ D  VDLE+G   + E+  ++  S   I AK+ LG+ +   V  DG I   + +++
Sbjct: 5   DSKESDLVVDLESGGNTSEEEGGRNPWSSGGIPAKKTLGRAWSGIVGFDGCIRSADSVSI 64

Query: 60  CH---NAPSSNGVSVEQ-VKLEGEKTVDHXXXXXXXXXXXXXXXXXXXXPPRPPTGPTLD 115
           C    N   + G SV+  V   GE+ ++                     PPR P GP+LD
Sbjct: 65  CKSELNYGGACGNSVDSLVGGLGEEQMEFVGKKMNKEKRKKIGSKKPSKPPRAPRGPSLD 124

Query: 116 AADQKLIKELTELAMLKRAKVERXXXXXXXXXXXXXXXXXXTIAMVFTVLFCLVIVFQG 174
           AAD K+++E+TELAM+KRA+VER                   IAM+ T+LFC +++FQG
Sbjct: 125 AADMKMVREITELAMMKRARVERMKALKMKTEKASSLSCSNFIAMIITILFCFILIFQG 183


>GSVIVT01034962001 assembled CDS
          Length = 223

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 72/136 (52%), Gaps = 7/136 (5%)

Query: 48  DGTINDEEGLNLCHNAPSSNGVSVEQVK------LEGEKTVDHXXXXXXXXXXXXXXXXX 101
           DG++  E+G++LC N  +S  +  E VK      L  ++ +D                  
Sbjct: 25  DGSVKGEDGVSLCSNGSNSGMIPKENVKVFIDKNLVEKEAMDSVDKKAVKEKRKKLSNKK 84

Query: 102 XXXPPRPPTGPTLDAADQKLIKELTELAMLKRAKVERXXXXXXXXXXXXXXXXXXTIAMV 161
              PPRPP GP+LDAADQKL++E+ ELAMLKRA+VER                    AMV
Sbjct: 85  SSKPPRPPKGPSLDAADQKLVREIAELAMLKRARVER-RKALRKMKVAKASSNSSLFAMV 143

Query: 162 FTVLFCLVIVFQGNSS 177
           FTV FCLVI+FQG SS
Sbjct: 144 FTVFFCLVILFQGLSS 159


>GSVIVT01028151001 assembled CDS
          Length = 255

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 13/147 (8%)

Query: 4   KDGDFDVDLEN-GLRVNAEDPHKDYISVVKIQAKELLGKIYGVF--VDGTINDEEGLNLC 60
           ++ D +VDL N     + ED  +D + +  IQA +L  ++       DG++ DE G+NL 
Sbjct: 7   RERDLEVDLGNCSGNTSEEDGGRDPV-LGNIQANKLFSRVGSEVWNFDGSVKDENGVNLI 65

Query: 61  HN---APSSNGVSVE---QVKLEGEKTVDHXXXXXXX---XXXXXXXXXXXXXPPRPPTG 111
            N     ++  V+VE    +   GE++ ++                       PPRPP G
Sbjct: 66  KNLVKYGNTADVNVELLIDISSRGEESRENSNLAMKQYVNEKHKKTNSRKPPKPPRPPQG 125

Query: 112 PTLDAADQKLIKELTELAMLKRAKVER 138
           P LDAADQK ++E++ELAM +RA++ER
Sbjct: 126 PLLDAADQKFVREISELAMRRRARIER 152