Jatropha Genome Database

JcCB0580021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0580021.20 - phase: 1 /partial
         (67 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020689001 assembled CDS                                       134   6e-33
GSVIVT01021205001 assembled CDS                                       123   2e-29

>GSVIVT01020689001 assembled CDS
          Length = 524

 Score =  134 bits (338), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 61/67 (91%), Positives = 64/67 (95%)

Query: 1   RFDYILTQQAFVAVDNGAPVNRDLISNFLSDPVHGAIEVCAQLRPTLDISVPPDADFVRP 60
           RFDYI+TQQA VAVDNG P+NRDLISNFLSDPVHGAIEVCAQLRPT+DISVP DADFVRP
Sbjct: 458 RFDYIITQQALVAVDNGVPINRDLISNFLSDPVHGAIEVCAQLRPTVDISVPADADFVRP 517

Query: 61  ELRQSSN 67
           ELRQSSN
Sbjct: 518 ELRQSSN 524


>GSVIVT01021205001 assembled CDS
          Length = 125

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/67 (88%), Positives = 63/67 (94%)

Query: 1   RFDYILTQQAFVAVDNGAPVNRDLISNFLSDPVHGAIEVCAQLRPTLDISVPPDADFVRP 60
           RFDYI+TQQA VAVD GA VN+DLISNFLSDPVHGAIEVCAQLR T+DISVPPDADFVRP
Sbjct: 59  RFDYIITQQALVAVDMGASVNQDLISNFLSDPVHGAIEVCAQLRSTVDISVPPDADFVRP 118

Query: 61  ELRQSSN 67
           ELRQSS+
Sbjct: 119 ELRQSSS 125