Jatropha Genome Database

JcCB0580021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0580021.10 + phase: 1 /partial
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018993001 assembled CDS                                       182   3e-47
GSVIVT01002095001 assembled CDS                                       152   4e-38
GSVIVT01007436001 assembled CDS                                        93   3e-20
GSVIVT01021628001 assembled CDS                                        51   9e-08
GSVIVT01023998001 assembled CDS                                        47   2e-06

>GSVIVT01018993001 assembled CDS
          Length = 393

 Score =  182 bits (462), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 97/114 (85%), Gaps = 2/114 (1%)

Query: 1   QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNAD 58
           QRLM QP  L TKVVCLTQVVN DEL+DDE YEDI+EDMR EGGKFG LVNV IPRP  +
Sbjct: 280 QRLMFQPGALATKVVCLTQVVNADELQDDEAYEDIVEDMRIEGGKFGNLVNVAIPRPKPN 339

Query: 59  SEALPGVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEYDG 112
            E  PG+GKVFLEYADI+GATKAR G+NGRKF GNQVVAV++PENKF QGEYDG
Sbjct: 340 GEPTPGLGKVFLEYADIDGATKARTGLNGRKFDGNQVVAVFYPENKFSQGEYDG 393


>GSVIVT01002095001 assembled CDS
          Length = 6467

 Score =  152 bits (383), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 87/102 (85%)

Query: 9    PTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNADSEALPGVGKV 68
            PTKV+CLT+V+N DEL+DDE YE+ILEDMR EGGKFG LV+VVIPRP+ + + +PGVGKV
Sbjct: 6364 PTKVLCLTEVINIDELRDDEAYEEILEDMRDEGGKFGALVHVVIPRPSPNGDLIPGVGKV 6423

Query: 69   FLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEY 110
            FLEY+D  G++ AR  ++GRKFGGN V AVY+PE+K+Y G+Y
Sbjct: 6424 FLEYSDTAGSSSARNALSGRKFGGNVVSAVYYPEDKYYDGDY 6465


>GSVIVT01007436001 assembled CDS
          Length = 116

 Score = 92.8 bits (229), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query: 45  GTLVNVVIPRPNADSEALPGVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENK 104
           G LV+VVIPRP+ + + +PGVGKVFLEY+D  G++ AR  ++GRKFGGN V AVY+PE+K
Sbjct: 49  GALVHVVIPRPSPNGDLIPGVGKVFLEYSDTAGSSSARNALSGRKFGGNVVSAVYYPEDK 108

Query: 105 FYQGEY 110
           +Y G+Y
Sbjct: 109 YYDGDY 114


>GSVIVT01021628001 assembled CDS
          Length = 170

 Score = 51.2 bits (121), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 5/101 (4%)

Query: 9   PTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNADSEALPGVGKV 68
           PT+V+ L  +V P E+  D+E ED   ++ +E  K+GT+  V+I      +  +    ++
Sbjct: 63  PTRVLLLRNMVGPGEV--DDELED---EVGSECAKYGTVTRVLIFEITEPNFPVDEAVRI 117

Query: 69  FLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGE 109
           F+++   E  TKA   ++GR FGG  V A ++ E++F + E
Sbjct: 118 FVQFERSEETTKALVDLDGRFFGGRVVHATFYDEDRFSKNE 158


>GSVIVT01023998001 assembled CDS
          Length = 427

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 60/105 (57%), Gaps = 13/105 (12%)

Query: 8   LPTKVVCLTQVVNPDELKDDEEYE-DILEDMRTEGGKFGTLVNVVIPRPNADSEALPGVG 66
           +P++ + L  + +P +L+ + +++ DI ED++ E  KFGT+ ++ + + +A        G
Sbjct: 330 VPSECLMLKNMFDP-KLETEPDFDLDIKEDVQDECSKFGTVKHIYVDKNSA--------G 380

Query: 67  KVFLEYADIEGATKARAGMNGRKFGGNQVVAVY-FPENKFYQGEY 110
            VFL + + + A  A+  ++GR F G  + A +  P+N  Y+ ++
Sbjct: 381 FVFLRFENTQAAISAQRALHGRWFAGKMITATFMLPQN--YEAKF 423