Jatropha Genome Database

JcCB0578941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0578941.10 - phase: 1 /pseudo/partial
         (187 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011679001 assembled CDS                                       141   2e-34
GSVIVT01008453001 assembled CDS                                        81   3e-16

>GSVIVT01011679001 assembled CDS
          Length = 384

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 95/147 (64%), Gaps = 5/147 (3%)

Query: 42  FIAGTVNVYDDISPEKAQAILFLAGNGSSISSNMAQPKIQVQAPSSKPIATDISPVSQXX 101
           F AGTVNVYDDISPEKAQAI+FLAGNG+S++S M QP+ QVQ P+SK  A D    +Q  
Sbjct: 195 FYAGTVNVYDDISPEKAQAIMFLAGNGASMASRMGQPRAQVQTPASKLAAGDGVLANQPM 254

Query: 102 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEILTAKSTGTT-TPVSKLESPRIASTMGSV 160
                                        EE+L AK+TG + TPV+KL+SP+    M SV
Sbjct: 255 NISPCSGLSSPISVSSHPVAQSGSGSTSTEEVLAAKTTGVSATPVTKLDSPK----MLSV 310

Query: 161 AATTMIPSAVPQARKASLARFLEKRKE 187
           AAT M+PSAVPQARKASLARFLEKRKE
Sbjct: 311 AATPMMPSAVPQARKASLARFLEKRKE 337


>GSVIVT01008453001 assembled CDS
          Length = 368

 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 70/146 (47%), Gaps = 30/146 (20%)

Query: 42  FIAGTVNVYDDISPEKAQAILFLAGNGSSISSNMAQPKIQVQAPSSKPIATDISPVSQXX 101
           F AG+VNV+D ISPE+AQAI+ LAGN   +S N   P  Q Q P   P   D        
Sbjct: 208 FYAGSVNVFDGISPEQAQAIMLLAGNVPPVSPNTTLPASQGQGPIIMPSGGD-------- 259

Query: 102 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEILTAKSTGTTTPVSKLESPRIASTMGSVA 161
                                         +  + K+ G  T  ++ E P + +++GS  
Sbjct: 260 --------------------GFMGNQAHTSQPGSGKTKGALTSTNQPEPPNVVTSLGSTT 299

Query: 162 ATTMIPSAVPQARKASLARFLEKRKE 187
             T IP AVPQARKASLARFLEKRKE
Sbjct: 300 P-TYIP-AVPQARKASLARFLEKRKE 323