Jatropha Genome Database

JcCB0577801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0577801.10 - phase: 2 /TE/pseudo/partial
         (85 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015960001 assembled CDS                                        66   3e-12
GSVIVT01012382001 assembled CDS                                        56   3e-09
GSVIVT01028343001 assembled CDS                                        51   1e-07

>GSVIVT01015960001 assembled CDS
          Length = 1205

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 9  SISIIPVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFIC 68
          S++  PV +D+ KH+E++++FIKEK+  G++ +T++ ++ Q+ADV TKGL+ RQF +F+C
Sbjct: 29 SVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVCMTYIPTEEQVADVFTKGLHKRQF-DFLC 87


>GSVIVT01012382001 assembled CDS
          Length = 952

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 45/69 (65%)

Query: 10  ISIIPVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFICK 69
           I+  PV +++ KHIE++ +FI+++V   V++  ++ S +QLAD  TK L+S  FH  + K
Sbjct: 883 IAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLADAFTKVLSSTVFHRLMFK 942

Query: 70  LGMCNIYAP 78
           LG  +  AP
Sbjct: 943 LGSIDPLAP 951


>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)

Query: 14   PVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFIC-KLG 71
            PV +++ KHIE++ +FI+EK+  G +  + V S++QLAD+ TK L   +   +IC KLG
Sbjct: 1545 PVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIFTKSLRGPRI-KYICNKLG 1602