Jatropha Genome Database

JcCB0577381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0577381.10 + phase: 0 /pseudo/partial
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023275001 assembled CDS                                        69   6e-13

>GSVIVT01023275001 assembled CDS
          Length = 376

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/95 (48%), Positives = 50/95 (52%), Gaps = 17/95 (17%)

Query: 16  RPKVHCSRKLLSGDLDLGIVVLIQSMNMDGGMKILSLFMMLLSMGIAVYPLQYVFCLFSW 75
           RPK    RKLLSGDLDLGIV L        G   L          IA   L+Y  C  S 
Sbjct: 92  RPK-DIVRKLLSGDLDLGIVGLDTVTEYGQGNDDLI---------IAHDALEYGDCRLSL 141

Query: 76  FRCSQLQLIPKYGIFENINSIGELGKMPQWTAEKP 110
                   IPKYGIFENINS+ EL +MPQWT +KP
Sbjct: 142 -------AIPKYGIFENINSLKELAQMPQWTVQKP 169