Jatropha Genome Database

JcCB0575581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0575581.10 + phase: 1 /partial
         (260 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014837001 assembled CDS                                       473   e-134
GSVIVT01033791001 assembled CDS                                       377   e-105
GSVIVT01011810001 assembled CDS                                       307   4e-84
GSVIVT01018820001 assembled CDS                                       302   1e-82
GSVIVT01024174001 assembled CDS                                       205   2e-53

>GSVIVT01014837001 assembled CDS
          Length = 357

 Score =  473 bits (1216), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/256 (90%), Positives = 239/256 (93%)

Query: 1   ELIKTAKYIATPGKGILAADESTGTIGKRLASINVENVESNRQALRELLFTCGNALPFLS 60
           ELIK AKYIATPGKGILAADESTGTIGKRL+SI V+N E NRQALRELLFT  NAL +LS
Sbjct: 11  ELIKNAKYIATPGKGILAADESTGTIGKRLSSIKVDNNEPNRQALRELLFTSPNALSYLS 70

Query: 61  GVILFEETLYQKTSDGKPFVEVLQENNVIPGIKVDKGTVELAGTNSETTTQGFDSLGARC 120
           GVILFEETLYQ T DGKPFVEVLQENNVIPGIKVDKGTVELAGTN ETTTQGFDSLGARC
Sbjct: 71  GVILFEETLYQNTRDGKPFVEVLQENNVIPGIKVDKGTVELAGTNGETTTQGFDSLGARC 130

Query: 121 AQYYKAGARFAKWRAVLKIGPTEPSELAIQQNAQGLARYAIICQENGLVPIVEPEVLTDG 180
            QYYKAGARFAKWR+VLKIGPTEPSEL+IQQNAQGLARYAIICQENGLVPIVEPE+LTDG
Sbjct: 131 QQYYKAGARFAKWRSVLKIGPTEPSELSIQQNAQGLARYAIICQENGLVPIVEPEILTDG 190

Query: 181 PHDIKKCAAVTETVLAAVYKALNDHHVLLEGTLLKPNMVTPGSDSPKVTPEEIAEYTVTA 240
            HDIKKCAAVTETVLAAVYKALNDHHVLLEGTLLKPNMVTPGS  PKV+ E IAEYTV A
Sbjct: 191 DHDIKKCAAVTETVLAAVYKALNDHHVLLEGTLLKPNMVTPGSAGPKVSSEVIAEYTVAA 250

Query: 241 LRRTVPPAVPGIVFLS 256
           LRRTVPPAVPGIVFLS
Sbjct: 251 LRRTVPPAVPGIVFLS 266


>GSVIVT01033791001 assembled CDS
          Length = 335

 Score =  377 bits (968), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/256 (74%), Positives = 207/256 (80%), Gaps = 18/256 (7%)

Query: 1   ELIKTAKYIATPGKGILAADESTGTIGKRLASINVENVESNRQALRELLFTCGNALPFLS 60
           ELI  A YI TPGKGILAADESTGTIGKRLASINVENVE NR+ALRELLF    AL +LS
Sbjct: 11  ELIANAAYIGTPGKGILAADESTGTIGKRLASINVENVEGNRRALRELLFCTPGALQYLS 70

Query: 61  GVILFEETLYQKTSDGKPFVEVLQENNVIPGIKVDKGTVELAGTNSETTTQGFDSLGARC 120
           GVILFEETLYQKT+ GKPFV+V++E  V+PGIKVDKGTV L GT+ ETTTQG D LG RC
Sbjct: 71  GVILFEETLYQKTASGKPFVDVMKEGGVLPGIKVDKGTVVLTGTDGETTTQGLDGLGERC 130

Query: 121 AQYYKAGARFAKWRAVLKIGPTEPSELAIQQNAQGLARYAIICQENGLVPIVEPEVLTDG 180
           A+YY AGARFAKWRAVLKIGPTEPSELAI +NA GLARYA+ICQENGL            
Sbjct: 131 AKYYAAGARFAKWRAVLKIGPTEPSELAIHENAYGLARYAMICQENGL------------ 178

Query: 181 PHDIKKCAAVTETVLAAVYKALNDHHVLLEGTLLKPNMVTPGSDSPKVTPEEIAEYTVTA 240
                 CA VTE VLAA YKALNDHHVLLEGTLLKPNMVTPGS++ KV+PE +AEYTV  
Sbjct: 179 ------CAYVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSEAKKVSPEVVAEYTVRT 232

Query: 241 LRRTVPPAVPGIVFLS 256
           L+RTVP AVP IVFLS
Sbjct: 233 LQRTVPAAVPAIVFLS 248


>GSVIVT01011810001 assembled CDS
          Length = 367

 Score =  307 bits (786), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 153/257 (59%), Positives = 191/257 (74%), Gaps = 2/257 (0%)

Query: 1   ELIKTAKYIATPGKGILAADESTGTIGKRLASINVENVESNRQALRELLFTCGNALPFLS 60
           EL++TAK +A+PG+GILA DES  T GKRLASI ++N E NRQA R+LL T      ++S
Sbjct: 49  ELVQTAKTVASPGRGILAIDESNATCGKRLASIGLDNTEPNRQAYRQLLLTTPGLGEYIS 108

Query: 61  GVILFEETLYQKTSDGKPFVEVLQENNVIPGIKVDKGTVELAGTNSETTTQGFDSLGARC 120
           G ILFEETLYQ T+DGK FV+ L+E  ++PGIKVDKG V L G+N+E+  QG D L +R 
Sbjct: 109 GAILFEETLYQSTTDGKKFVDCLREKKIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRS 168

Query: 121 AQYYKAGARFAKWRAVLKIGPTEPSELAIQQNAQGLARYAIICQENGLVPIVEPEVLTDG 180
           A+YYK GARFAKWR V+ I P  PS LA+++ A GLARYA I Q+NGLVPIVEPE+L DG
Sbjct: 169 AEYYKQGARFAKWRTVVSI-PCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDG 227

Query: 181 PHDIKKCAAVTETVLAAVYKALNDHHVLLEGTLLKPNMVTPGSDSP-KVTPEEIAEYTVT 239
            H I +   V E V + V+  L  ++VL EG LLKP+MVTPG++   K +PE IA+YT+T
Sbjct: 228 DHPIDRTLEVAEKVWSEVFFYLAQNNVLFEGILLKPSMVTPGAEHKEKASPETIAKYTLT 287

Query: 240 ALRRTVPPAVPGIVFLS 256
            LRR VPPAVPGI+FLS
Sbjct: 288 MLRRRVPPAVPGIMFLS 304


>GSVIVT01018820001 assembled CDS
          Length = 349

 Score =  302 bits (773), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/257 (58%), Positives = 188/257 (73%), Gaps = 2/257 (0%)

Query: 1   ELIKTAKYIATPGKGILAADESTGTIGKRLASINVENVESNRQALRELLFTCGNALPFLS 60
           EL+KTAK IA+PG+GILA DES  T GKRLASI +EN E+NRQA R LL T      ++S
Sbjct: 52  ELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPGLGNYIS 111

Query: 61  GVILFEETLYQKTSDGKPFVEVLQENNVIPGIKVDKGTVELAGTNSETTTQGFDSLGARC 120
           G ILFEETLYQ T+DGK  V+VL E  ++PGIKVDKG V L G+N E+  QG D L +R 
Sbjct: 112 GAILFEETLYQSTTDGKKMVDVLVEQKIVPGIKVDKGLVPLVGSNDESWCQGLDGLASRS 171

Query: 121 AQYYKAGARFAKWRAVLKIGPTEPSELAIQQNAQGLARYAIICQENGLVPIVEPEVLTDG 180
           A YY+ GARFAKWR V+ I P  PS LA+++ A GLARYA I Q+NGLVPIVEPE+L DG
Sbjct: 172 AAYYQQGARFAKWRTVVSI-PNGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDG 230

Query: 181 PHDIKKCAAVTETVLAAVYKALNDHHVLLEGTLLKPNMVTPGSD-SPKVTPEEIAEYTVT 239
            H I +   V + V A V+  L +++V+ EG LLKP+MVTPG++   K TPE++A+YT+ 
Sbjct: 231 EHGIDRTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKDKATPEQVAQYTLK 290

Query: 240 ALRRTVPPAVPGIVFLS 256
            L R +PPAVPGI+FLS
Sbjct: 291 LLSRRIPPAVPGIMFLS 307


>GSVIVT01024174001 assembled CDS
          Length = 267

 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 131/179 (73%), Gaps = 2/179 (1%)

Query: 79  FVEVLQENNVIPGIKVDKGTVELAGTNSETTTQGFDSLGARCAQYYKAGARFAKWRAVLK 138
            V+VL E  ++PGIKVDKG V L G+N E+  QG D L +R A YY+ GARFAKWR V+ 
Sbjct: 1   MVDVLVEQKIVPGIKVDKGLVPLVGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVS 60

Query: 139 IGPTEPSELAIQQNAQGLARYAIICQENGLVPIVEPEVLTDGPHDIKKCAAVTETVLAAV 198
           I P  PS LA+++ A GLARYA I Q+NGLVPIVEPE+L DG H I++   V + V A V
Sbjct: 61  I-PNGPSALALKEAAWGLARYAAISQDNGLVPIVEPEILLDGEHGIERTFEVAQKVWAEV 119

Query: 199 YKALNDHHVLLEGTLLKPNMVTPGSD-SPKVTPEEIAEYTVTALRRTVPPAVPGIVFLS 256
           +  L +++V+ EG LLKP+MVTPG++   + TPE++A+YT+  L+R +PPAVPGI+FLS
Sbjct: 120 FFYLAENNVMFEGILLKPSMVTPGAECKDRATPEQVADYTLKLLKRRIPPAVPGIMFLS 178