Jatropha Genome Database

JcCB0574131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0574131.10 - phase: 2 /partial
         (132 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036649001 assembled CDS                                       181   6e-47
GSVIVT01033632001 assembled CDS                                       100   3e-22
GSVIVT01011929001 assembled CDS                                        54   1e-08

>GSVIVT01036649001 assembled CDS
          Length = 469

 Score =  181 bits (460), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 102/124 (82%)

Query: 3   EGSAIHSYRVCDFGTFKRSVAFHLEDAVELSSNTVFNPVKVSSQAVSSDPLHIGPFNKSN 62
           EG++IHSYRV DFGT ++S+ FHLEDAV+LS +T FN  K S +AV+SDPLH   F+KS 
Sbjct: 36  EGNSIHSYRVSDFGTLEQSIGFHLEDAVDLSGSTAFNSTKPSGRAVTSDPLHSVTFDKSQ 95

Query: 63  TSFNINPSAAQVESQRLSLEKNQQLNLVSISGGNTENWGESNMADASPRTDISTDADTDD 122
            SF+INPSAA+VESQRL L+K QQ NLVSIS G+ ENWGES MADASPRTDISTD DTDD
Sbjct: 96  NSFDINPSAARVESQRLPLQKGQQSNLVSISSGSVENWGESAMADASPRTDISTDVDTDD 155

Query: 123 KNQR 126
           K QR
Sbjct: 156 KVQR 159


>GSVIVT01033632001 assembled CDS
          Length = 451

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 82/126 (65%), Gaps = 19/126 (15%)

Query: 1   GIEGSAIHSYRVCDFGTFKRSVAFHLEDAVELSSNTVFNPVKVSSQAVSSDPLHIGPFNK 60
           G EG+ I S R+ DFG  ++S+ F +EDAV+LS N+VFN  K SSQA S+D L  G  NK
Sbjct: 34  GTEGNNIRS-RISDFGALEQSLGFRIEDAVDLSRNSVFNSAKPSSQAPSTD-LQFGALNK 91

Query: 61  SNTSFNINPSAAQVESQRLSLEKNQQLNLVSISGGNTENWGESNMADASPRTDISTDADT 120
           ++T                 ++K  Q N+ S+SG + ENWGESNMADASPRTD STD DT
Sbjct: 92  TST-----------------VQKELQQNIASVSGSHRENWGESNMADASPRTDTSTDVDT 134

Query: 121 DDKNQR 126
           D+KNQR
Sbjct: 135 DEKNQR 140


>GSVIVT01011929001 assembled CDS
          Length = 453

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 66/126 (52%), Gaps = 18/126 (14%)

Query: 11  RVCDFGTFKRSVAFHLEDAVELSSNTVFNPVKVSSQAVSSDPLHIGPFNKSNTSFNINPS 70
           R  D G  ++S AFH +DAV+LSS+ +F  +K  +  V S PLH G  N      NI PS
Sbjct: 23  RFPDLGELEQSAAFHHDDAVDLSSSAMFR-LKSGNVGVVS-PLHFGGLNT-----NIGPS 75

Query: 71  -------AAQVESQRLSLEKNQQLNLV----SISGGNTENWGESNMADASPRTDISTDAD 119
                     V++ +L   K           S+  G+ ENWGES M D S +TD STD D
Sbjct: 76  DMVSTSGTGVVDTGQLMFSKGTAETATATVASLGNGHFENWGESGMGDNSQQTDTSTDVD 135

Query: 120 TDDKNQ 125
           TDDKNQ
Sbjct: 136 TDDKNQ 141