Jatropha Genome Database

JcCB0573121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0573121.10 + phase: 0 /partial
         (129 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008023001 assembled CDS                                        52   7e-08
GSVIVT01027588001 assembled CDS                                        51   2e-07
GSVIVT01023283001 assembled CDS                                        51   2e-07
GSVIVT01020011001 assembled CDS                                        49   8e-07
GSVIVT01019876001 assembled CDS                                        47   2e-06
GSVIVT01026145001 assembled CDS                                        47   2e-06

>GSVIVT01008023001 assembled CDS
          Length = 345

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 9   SSENAQSDAKRGKPTRRRFTGDAHVPIN---KRVRVPAICVPAIFHLKKERGLRSDGDII 65
           SS    ++  +  P +R  T D H  ++   +R+R+PA+C   +F L +E G +SDG+ I
Sbjct: 57  SSLQIAAEPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETI 116

Query: 66  HWLIHELRPELLPA 79
            WL+ +  P ++ A
Sbjct: 117 EWLLQQAEPAVIAA 130


>GSVIVT01027588001 assembled CDS
          Length = 340

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 22  PTRRRFTGDAHVPI---NKRVRVPAICVPAIFHLKKERGLRSDGDIIHWLIHELRPELLP 78
           P +R  T D H  +    +R+R+PA C   IF L +E G +SDG+ I WL+    P ++ 
Sbjct: 113 PVKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIA 172

Query: 79  A 79
           A
Sbjct: 173 A 173


>GSVIVT01023283001 assembled CDS
          Length = 387

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 21  KPTRRRFTGDAHVPIN---KRVRVPAICVPAIFHLKKERGLRSDGDIIHWLIHELRPELL 77
            P  +R T D H  ++   +R+R+PA C   +F L +E G +SDG+ I WL+ +  P ++
Sbjct: 107 NPPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 166

Query: 78  PA 79
            A
Sbjct: 167 AA 168


>GSVIVT01020011001 assembled CDS
          Length = 317

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 25  RRFTGDAHVPIN---KRVRVPAICVPAIFHLKKERGLRSDGDIIHWLIHELRPELLPA 79
           R  T D H  ++   +R+R+PA C   +F L +E G +SDG+ I WL+ +  P ++ A
Sbjct: 46  RTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAA 103


>GSVIVT01019876001 assembled CDS
          Length = 431

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 24  RRRFTGDAHVPI---NKRVRVPAICVPAIFHLKKERGLRSDGDIIHWLIHELRPELLPA 79
           RR  T D H  +    +R+R+PA C   IF L +E G +SDG+ + WL+      ++ A
Sbjct: 183 RRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEA 241


>GSVIVT01026145001 assembled CDS
          Length = 288

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 36  NKRVRVPAICVPAIFHLKKERGLRSDGDIIHWLIHELRPELLPA 79
            +R+R+P IC   +F L +E G +SDG  I WL+ +  P ++ A
Sbjct: 118 GRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAA 161