Jatropha Genome Database

JcCB0572431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0572431.10 + phase: 0 /partial
         (325 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017699001 assembled CDS                                        89   2e-18

>GSVIVT01017699001 assembled CDS
          Length = 370

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/324 (30%), Positives = 134/324 (41%), Gaps = 71/324 (21%)

Query: 24  MDTAGIVSSPVLRFSESGVNN--------------------FSLKLPLGTVNSRVSFKTR 63
           M+ +G+V   V  FS +G++                     FS    LG+ +SRV+ + R
Sbjct: 1   MEVSGVVFRQVPFFSGAGIDTQSSKSSFSGVSVDSGNRISAFSELRLLGSRDSRVAVRPR 60

Query: 64  DFSGILSHKFSDSGHLQYYVSPTRSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLFSR 123
             SG     F D  HL+YY    R G                              LFS 
Sbjct: 61  KPSG-----FRDESHLKYYYESPRCGAKKDKDKVTTKKKSKLLKALSKDL-----SLFSD 110

Query: 124 TAQAEEFG--SRLNLMDDVKQKMISEATEFLLAELRHLKSXXXXXXXXXXXXXASLINGE 181
                 FG  S   L  +VK KMISEA E LL +L+ +++             A L    
Sbjct: 111 LG----FGVDSDEGLFGEVKGKMISEAAEVLLKQLQQMRAEEKELKRRRKEEKAKL--KA 164

Query: 182 APVXXXXXXXXXXXXXXXXXCEVVMDVSRLGNTAVKQFIENETEHANYREQATLAEISTP 241
             +                 C  V+D++ L + AV + I++E               S P
Sbjct: 165 TRMETGVVCESSSSESSDSECGEVVDMTHLRSGAVVEPIKDE---------------SQP 209

Query: 242 VLETTESFNVLNIEEDCRSNCSNESENTGMAVAGGKKIEICMGGKCKKMGAIALLEEFEK 301
           V++  +      +EE              M  AG K+IE+CMGGKCKK GA ALLEEFE+
Sbjct: 210 VIQEAK-----GLEEP-------------MMGAGAKRIEVCMGGKCKKSGAEALLEEFER 251

Query: 302 KVGKEGAVVGCKCMGKCKNAPNVK 325
            VG EGAVVGCKCMGKC+  PNV+
Sbjct: 252 VVGVEGAVVGCKCMGKCRVGPNVR 275