Jatropha Genome Database

JcCB0568851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0568851.10 - phase: 0 /partial
         (342 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033316001 assembled CDS                                       300   5e-82
GSVIVT01032093001 assembled CDS                                       264   4e-71
GSVIVT01025263001 assembled CDS                                       191   6e-49
GSVIVT01024728001 assembled CDS                                        73   2e-13

>GSVIVT01033316001 assembled CDS
          Length = 619

 Score =  300 bits (769), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 191/318 (60%), Positives = 218/318 (68%), Gaps = 45/318 (14%)

Query: 24  FNQPMSPTASSISHSSLAWPQPNVPTLHLPAXXXXXXXXXXXXXXXDIPPEDLNLLSDFD 83
           F  P+SP+A+ +SHSS+ W QPNVPTLHLP                DIP ED+NL+ DFD
Sbjct: 326 FTPPLSPSANGVSHSSMGWAQPNVPTLHLPGSNLQSSRLRSSLNARDIPAEDINLMLDFD 385

Query: 84  AQQ-QILNDLTCFSQSRNNSASLNRSGRSKTLTPSNLEELFSAEISSPRYSDQ--AAAVF 140
            QQ Q+LN+L+C SQ   NS SLNRSGRSKTLTPSNL+ELFSAE SSPRYSDQ  A+AV+
Sbjct: 386 IQQHQLLNELSCLSQPCVNSNSLNRSGRSKTLTPSNLDELFSAESSSPRYSDQALASAVY 445

Query: 141 SPTHKSAVLNQFQQQQSMLSPINTSVFSPKNVDHPLLQASFGMGSPGRMSPRSVEPISPM 200
           SPTHKSAVLNQFQQQQSM                              MSPRS+EPISPM
Sbjct: 446 SPTHKSAVLNQFQQQQSM------------------------------MSPRSMEPISPM 475

Query: 201 GSRLSAFVQREK-QHQQLRSLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGG 259
            SR S F QREK Q QQ RSLSSRDLGSN+ A  IV SP+NSW+KWGS N K DW++N  
Sbjct: 476 SSRASMFAQREKQQQQQFRSLSSRDLGSNSSA--IVGSPINSWSKWGSSNVKPDWAMN-A 532

Query: 260 DELGHLRRSSSFELGNNGEEPDLSWVQSLVKESPPEMLKEKFGVP---VSGAASSGEGLN 316
           +ELG  RRS+SFELGNNGEEPDLSWVQSLVKESP E  KEK   P    + A+SS +G N
Sbjct: 533 NELGGHRRSNSFELGNNGEEPDLSWVQSLVKESPTET-KEKAATPALDTAEASSSSDGSN 591

Query: 317 PSSQIDS----VLESWLE 330
            +SQI+S    VL +WLE
Sbjct: 592 LNSQIESIDHAVLGAWLE 609


>GSVIVT01032093001 assembled CDS
          Length = 518

 Score =  264 bits (675), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 163/249 (65%), Positives = 181/249 (72%), Gaps = 44/249 (17%)

Query: 95  FSQSRNNSASLNRSGRSKTLTPSNLEELFSAEISSPRYSDQAAAVFSPTHKSAVLN-QFQ 153
           FS  R N+ASL+RS RSKTLTPSNLEELFSAEISS      ++AVFSP+HKSA+LN   Q
Sbjct: 292 FSPPRTNAASLSRSARSKTLTPSNLEELFSAEISSSPRYSDSSAVFSPSHKSAILNQFQQ 351

Query: 154 QQQSMLSPINTSVFSPKNVDHPLLQASFGMGSPGRMSPRSVEPISPMGSRLSAFVQREKQ 213
           QQQSML                             MSPRS+EPISPMG RLSA  QREKQ
Sbjct: 352 QQQSML-----------------------------MSPRSMEPISPMGPRLSAIAQREKQ 382

Query: 214 HQQLRSLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGGDELGHLRRSSSFEL 273
           HQQLRSLSSRDLGSNNP AS+V SPVNSW+KWGSP GKLDWS+N GDE+G L+RSSSFEL
Sbjct: 383 HQQLRSLSSRDLGSNNP-ASVVGSPVNSWSKWGSPTGKLDWSVN-GDEMGRLKRSSSFEL 440

Query: 274 GNNGEEPDLSWVQSLVKESPPEMLKEKFGVPVSGAASSGEGLNPSSQID----------- 322
           GNNGEEPDLSWV SLVKESPPEM+KEKF  PVS +ASSGEGLN +SQI+           
Sbjct: 441 GNNGEEPDLSWVHSLVKESPPEMMKEKFAAPVSASASSGEGLNSNSQIESNSNSQIDSVD 500

Query: 323 -SVLESWLE 330
            SV+ +WLE
Sbjct: 501 HSVIGAWLE 509


>GSVIVT01025263001 assembled CDS
          Length = 548

 Score =  191 bits (484), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 112/201 (55%), Positives = 131/201 (65%), Gaps = 37/201 (18%)

Query: 93  TCFSQSRNNSASLNRSGRSKTLTPSNLEELFSAEISSPRYSDQAAA--VFSPTHKSAVLN 150
           TC+ +S + SAS N S RSK LTPSNL+ELFSAE+SSPRY+D  AA  +FSP+HKS VLN
Sbjct: 360 TCWLRS-SISASGNLSVRSKALTPSNLDELFSAEMSSPRYADHVAASTMFSPSHKSVVLN 418

Query: 151 QFQQQQSMLSPINTSVFSPKNVDHPLLQASFGMGSPGRMSPRSVEPISPMGSRLSAFVQR 210
           QFQ QQ ML                             MSPR +EP+SP+ SR S+   R
Sbjct: 419 QFQHQQGML-----------------------------MSPRGIEPLSPLSSRFSSLAHR 449

Query: 211 EKQHQQLRSLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGGDELGHLRRSSS 270
           EKQ Q LRSLSSRDLGSN   A IV SP NSW+KW SPNGK+DWS+  G+EL   R+  +
Sbjct: 450 EKQQQHLRSLSSRDLGSN--GAGIVNSPANSWSKWESPNGKIDWSVQ-GEELAWHRK--T 504

Query: 271 FELGNNGEEPDLSWVQSLVKE 291
           F +  N E PDLSWVQSLVKE
Sbjct: 505 FSIEQNREGPDLSWVQSLVKE 525


>GSVIVT01024728001 assembled CDS
          Length = 752

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 107/247 (43%), Gaps = 87/247 (35%)

Query: 70  DIPPEDLNLLSDFDAQQQILNDLTCFSQSRNNSASLNRSGRSKTLTPSNLEELFSAEISS 129
           D+  + L L S    QQQ+++++   S   + ++ LNR G  K   P+NLE++F +    
Sbjct: 529 DMDLDVLGLESHRRRQQQLMDEMAGLSSPSSWNSELNRLGGMK---PTNLEDIFGS---- 581

Query: 130 PRYSDQAAAVFSPTHKSAVLNQFQ---------QQQSMLSPINTSVFSPKNVDHPLLQAS 180
                       PT    +L Q Q         Q     SP+  S             AS
Sbjct: 582 ----------LDPT----ILPQLQGLSMDAAAPQLHLSSSPVRGS-------------AS 614

Query: 181 FGMGSPGRMSPRSVEPISPMGSRLSAFVQREKQHQQLRSLSSRDLGSNNPAASIVESPVN 240
           FGM       P      + + SR +AF +R +                    ++V SP+ 
Sbjct: 615 FGM------DPSGSATAAVLNSRAAAFAKRSQ--------------------TVVPSPL- 647

Query: 241 SWTKWGSPNGKLDWSINGGDELGHLRRSSSFELGNNG--------------EEPDLSWVQ 286
             + WGSP+GKLDW I G +EL  LR+S+SF   +NG              +EPD+SWVQ
Sbjct: 648 --SDWGSPDGKLDWGIQG-EELNKLRKSASFGFRSNGSSYAAQAASVPAAADEPDVSWVQ 704

Query: 287 SLVKESP 293
           SLVKE+P
Sbjct: 705 SLVKEAP 711