Jatropha Genome Database

JcCB0555631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0555631.10 - phase: 1 /pseudo/partial
         (290 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013720001 assembled CDS                                       197   7e-51
GSVIVT01024008001 assembled CDS                                       191   5e-49
GSVIVT01013744001 assembled CDS                                        70   8e-13

>GSVIVT01013720001 assembled CDS
          Length = 545

 Score =  197 bits (500), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 109/191 (57%), Positives = 132/191 (69%), Gaps = 19/191 (9%)

Query: 86  GLMGDSMIYVPWFPKFLI-LQDELKEHSDDEDGK-----NGNQSNIPSETLSQNGGLGNG 139
            ++GD++ +V    K    LQDEL+EHSDDE GK     N N +N+ SE L+ +G   N 
Sbjct: 341 SILGDAIEFVKELQKQAKDLQDELEEHSDDEGGKINAGINSNHNNVQSEILNNDGSGVN- 399

Query: 140 FQAGASEVSCPKLNQQKSENFHDKGQQMEVQVEVAQIDGNEFFVKVFCEHKAGGFVRLME 199
                  +  PK N +  +  +DK QQME QVEVAQI+GNEFFVKVFCEHKAGGF RLME
Sbjct: 400 -------IGLPKQNHETDQINNDKAQQMEPQVEVAQIEGNEFFVKVFCEHKAGGFARLME 452

Query: 200 ALDSLGLEVTNVNVTSCRGLVSNVFKVEKKDSEMVQADYVRNSLLELTRDHPRGWPAS-- 257
           AL SLGLEVTN NVTSC+GLVSNVFKVEK+DSEMVQAD+VR+SLLELT+     W     
Sbjct: 453 ALSSLGLEVTNANVTSCKGLVSNVFKVEKRDSEMVQADHVRDSLLELTKSPSEKWSDQMA 512

Query: 258 ---DNGNGMDY 265
              +NG G+D+
Sbjct: 513 YPLENGGGLDF 523


>GSVIVT01024008001 assembled CDS
          Length = 573

 Score =  191 bits (484), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 104/186 (55%), Positives = 128/186 (68%), Gaps = 6/186 (3%)

Query: 86  GLMGDSMIYVPWFPKFLI-LQDELKEHSDDEDGKNGNQSNIPSETLSQNGGLGNGFQAGA 144
            ++GD++ +V    K    LQDEL+E+S+DE        N  ++     G  GNG  A A
Sbjct: 364 SILGDAIEFVKELQKQAKDLQDELEENSEDEVNIGPKTENEETQNRFLMGAAGNGIAASA 423

Query: 145 SEVSCPKLNQQKSENFHDKGQQMEVQVEVAQIDGNEFFVKVFCEHKAGGFVRLMEALDSL 204
                 K N +  +   DK QQME QVEVAQI+GN+FFVKVFCEHKAGGFVRLMEAL SL
Sbjct: 424 CRPPSAKQNHETDQITDDKAQQMEPQVEVAQIEGNDFFVKVFCEHKAGGFVRLMEALSSL 483

Query: 205 GLEVTNVNVTSCRGLVSNVFKVEKKDSEMVQADYVRNSLLELTRDHPRGWP-----ASDN 259
           GLEVTN NVTSC+GLVSN+FKVEK+DSEMVQAD+VR+SLLELT++    W      AS+N
Sbjct: 484 GLEVTNANVTSCKGLVSNLFKVEKRDSEMVQADHVRDSLLELTKNPSEKWHGQMAYASEN 543

Query: 260 GNGMDY 265
           G G+D+
Sbjct: 544 GGGLDF 549


>GSVIVT01013744001 assembled CDS
          Length = 176

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 27/154 (17%)

Query: 86  GLMGDSMIYVPWFPKFLI-LQDELKEHSDD---EDGKNGNQSNIPSETLSQNGGLGNGFQ 141
            ++GD++ Y+    + +  LQDE+    +D   +D +    S     T   N G      
Sbjct: 5   SILGDAIQYIVELQQEVKKLQDEVNMEQEDCNMKDAELKRSSRYSPATTEHNRG------ 58

Query: 142 AGASEVSCPKLNQQKSENFHDKGQ--QMEVQVEVAQIDGNEFFVKVFCEHKAGGFVRLME 199
                          S +  +K Q     VQVEV  I   EF +K+ CE K GGF RLME
Sbjct: 59  ---------------SSSIREKKQIESQRVQVEVKLIGTREFLLKLLCEQKRGGFARLME 103

Query: 200 ALDSLGLEVTNVNVTSCRGLVSNVFKVEKKDSEM 233
           A++ LGL+V + N+T+  G V N+F+VE ++  M
Sbjct: 104 AINVLGLQVVDANITTFNGNVLNIFRVEAREIRM 137