Jatropha Genome Database

JcCB0551851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0551851.10 - phase: 0 /partial
         (106 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025882001 assembled CDS                                       171   5e-44
GSVIVT01037549001 assembled CDS                                       167   9e-43
GSVIVT01025879001 assembled CDS                                       165   3e-42
GSVIVT01025881001 assembled CDS                                       162   3e-41
GSVIVT01025282001 assembled CDS                                        49   3e-07

>GSVIVT01025882001 assembled CDS
          Length = 204

 Score =  171 bits (434), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 95/103 (92%)

Query: 4   DRTAATGSKNLVFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKLSCGEGGCGACIVLV 63
           +++ +T + +LVFAVNG+RFE+S+I PSTTLLEFLRS T FK  KLSCGEGGCGAC+VL+
Sbjct: 2   EQSESTVNNSLVFAVNGKRFEVSTIHPSTTLLEFLRSHTPFKGAKLSCGEGGCGACVVLL 61

Query: 64  SKYDPVLDQVEDFTVSSCLTLLCSINGCSITTTEGLGNSKDGF 106
           SKY+PVLDQV+DFTVSSCLTLLCSINGCSITTTEGLGN+KDGF
Sbjct: 62  SKYNPVLDQVDDFTVSSCLTLLCSINGCSITTTEGLGNTKDGF 104


>GSVIVT01037549001 assembled CDS
          Length = 1219

 Score =  167 bits (423), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 78/93 (83%), Positives = 86/93 (92%)

Query: 14  LVFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKLSCGEGGCGACIVLVSKYDPVLDQV 73
           LVF+VNG+RFE+S+I PSTTLLEFLRS T FK  KLSCGEGGCGAC+VL+SKYDPVLDQV
Sbjct: 12  LVFSVNGERFEVSTIHPSTTLLEFLRSHTPFKGAKLSCGEGGCGACVVLLSKYDPVLDQV 71

Query: 74  EDFTVSSCLTLLCSINGCSITTTEGLGNSKDGF 106
           +DF VSSCLTLLCSINGCSITTTEGLGN K+GF
Sbjct: 72  DDFAVSSCLTLLCSINGCSITTTEGLGNIKNGF 104


>GSVIVT01025879001 assembled CDS
          Length = 1380

 Score =  165 bits (418), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 94/103 (91%)

Query: 4   DRTAATGSKNLVFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKLSCGEGGCGACIVLV 63
           +++ +T + +LVFAVNG+RFE+S+I PSTT+LEFLRS T FK  KLSCGEGGCGAC+VL+
Sbjct: 2   EQSESTVNNSLVFAVNGKRFEVSTIHPSTTVLEFLRSHTPFKGPKLSCGEGGCGACVVLL 61

Query: 64  SKYDPVLDQVEDFTVSSCLTLLCSINGCSITTTEGLGNSKDGF 106
           SKY+P+LDQ++D TVSSCLTLLCS+NGCSITTTEGLGNSKDGF
Sbjct: 62  SKYNPILDQLDDCTVSSCLTLLCSVNGCSITTTEGLGNSKDGF 104


>GSVIVT01025881001 assembled CDS
          Length = 1096

 Score =  162 bits (410), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 92/103 (89%)

Query: 4   DRTAATGSKNLVFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKLSCGEGGCGACIVLV 63
           +++ +T +  LVFAVNG+RFE+S+I PSTT+LEFLRS T FK  KLSCGEGGCGAC+VL+
Sbjct: 2   EQSESTVNNCLVFAVNGKRFEVSTIHPSTTVLEFLRSHTPFKGPKLSCGEGGCGACVVLL 61

Query: 64  SKYDPVLDQVEDFTVSSCLTLLCSINGCSITTTEGLGNSKDGF 106
           SKY+PV DQV+D TVSSCLTLLCS+NGCSITTTEGLGN+KDGF
Sbjct: 62  SKYNPVHDQVDDCTVSSCLTLLCSVNGCSITTTEGLGNTKDGF 104


>GSVIVT01025282001 assembled CDS
          Length = 1301

 Score = 49.3 bits (116), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/96 (42%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 11  SKNLVFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKLSCGEGGCGACIVLVSKYDPVL 70
           SK  +  VNG R  L       TLLE+LR D      KL CGEGGCGAC V+VS +D   
Sbjct: 17  SKEAILYVNGVRKVLPDGLAHLTLLEYLR-DIGLTGTKLGCGEGGCGACTVMVSYFDENS 75

Query: 71  DQVEDFTVSSCLTLLCSINGCSITTTEGLGNSKDGF 106
            +   + V++CL  L S+ G  + T EG+GN ++G 
Sbjct: 76  KKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRNGL 111