Jatropha Genome Database

JcCB0551591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0551591.10 - phase: 0 
         (128 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031551001 assembled CDS                                       166   2e-42
GSVIVT01009899001 assembled CDS                                       123   3e-29
GSVIVT01015297001 assembled CDS                                       119   5e-28
GSVIVT01016971001 assembled CDS                                       117   1e-27
GSVIVT01002667001 assembled CDS                                        65   9e-12

>GSVIVT01031551001 assembled CDS
          Length = 523

 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 95/109 (87%)

Query: 1   MLSKDVEQQPIPQHLMTSSSEDLFDFIASTLKQFVEKEESGSEFASVRTRELGFTFSFPV 60
           +LS DVE+QPIPQ LMTS+SEDLFDFIAS+LKQFVE+E   SEF+ V+ RELGFTFSFPV
Sbjct: 121 ILSCDVERQPIPQDLMTSTSEDLFDFIASSLKQFVEREAQNSEFSPVKRRELGFTFSFPV 180

Query: 61  KQTSIRTGNLIKWTKGFAIEDMVGRDVLECLQAGLTRNGLDMQVVLLVS 109
           KQTS+ +G LIKWTK F+++DMVG+DV ECLQ  +TRNGLDM+V +LV+
Sbjct: 181 KQTSVSSGILIKWTKRFSVKDMVGKDVSECLQHAMTRNGLDMRVAVLVN 229


>GSVIVT01009899001 assembled CDS
          Length = 411

 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 74/109 (67%)

Query: 1   MLSKDVEQQPIPQHLMTSSSEDLFDFIASTLKQFVEKEESGSEFASVRTRELGFTFSFPV 60
           +++ + EQ  IPQ LM  +SE+LFDFIA  L  F +KE       S R RE+GFTFSFPV
Sbjct: 42  VIATEFEQVTIPQELMFGTSEELFDFIACGLANFAKKEGGKFHLPSGRKREIGFTFSFPV 101

Query: 61  KQTSIRTGNLIKWTKGFAIEDMVGRDVLECLQAGLTRNGLDMQVVLLVS 109
           KQTSI +G L+KWTKGFA+    GRDV+ CL   + R GLDMQV  LV+
Sbjct: 102 KQTSIDSGILMKWTKGFAVSGTAGRDVVACLNEAMERQGLDMQVSALVN 150


>GSVIVT01015297001 assembled CDS
          Length = 436

 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 78/109 (71%)

Query: 1   MLSKDVEQQPIPQHLMTSSSEDLFDFIASTLKQFVEKEESGSEFASVRTRELGFTFSFPV 60
           ++ ++ E+  IP HLM  SS+ LFD+IA+ L +FV  E  G   +  R RELGFTFSFPV
Sbjct: 60  VVKQEFEEVSIPPHLMVGSSDALFDYIAAALAKFVATEGEGLHVSPGRQRELGFTFSFPV 119

Query: 61  KQTSIRTGNLIKWTKGFAIEDMVGRDVLECLQAGLTRNGLDMQVVLLVS 109
           +Q+SI +G+LIKWTKGF+IED VG+DV+  L   + R GLDM+V  LV+
Sbjct: 120 RQSSISSGSLIKWTKGFSIEDAVGQDVVGELTKAMERIGLDMRVSALVN 168


>GSVIVT01016971001 assembled CDS
          Length = 448

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 71/99 (71%)

Query: 11  IPQHLMTSSSEDLFDFIASTLKQFVEKEESGSEFASVRTRELGFTFSFPVKQTSIRTGNL 70
           IP +LM  S++ LFD+IA+ L +FV KE  G      R RELGFTFSFPV QTSI +GNL
Sbjct: 70  IPPNLMVKSTDALFDYIATELAKFVAKEGPGFHLPPGRQRELGFTFSFPVMQTSINSGNL 129

Query: 71  IKWTKGFAIEDMVGRDVLECLQAGLTRNGLDMQVVLLVS 109
           IKWTKGF+I+D +GRDV+  L   + R G+DM+V  LV+
Sbjct: 130 IKWTKGFSIDDTIGRDVVAELTKAIERKGVDMRVSALVN 168


>GSVIVT01002667001 assembled CDS
          Length = 479

 Score = 65.1 bits (157), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 61/104 (58%), Gaps = 4/104 (3%)

Query: 7   EQQPIPQHLMTSSSEDLFDFIASTLKQFVEKEESGSEFASVRTRELGFTFSFPVKQTSIR 66
           E+  IP ++M  +S++LFD+IA  L +F+ + E  ++    R + LGF  S+PV Q +  
Sbjct: 113 EEVSIPSNVMGGTSQELFDYIALELAKFISEHEVTTDDTPDRQKALGFIVSYPVDQAAAS 172

Query: 67  TGNLIKWTKGFAIEDMV---GRDVLECLQAGLTRNGLDMQVVLL 107
           +G  IKW + F++ D V   G+ +       L ++G++++V+ L
Sbjct: 173 SGAAIKW-RSFSVTDTVECAGKALASNFNRALEKHGVNLRVLQL 215