Jatropha Genome Database

JcCB0551561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0551561.10 - phase: 0 
         (416 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025749001 assembled CDS                                       403   e-113
GSVIVT01025748001 assembled CDS                                       399   e-111
GSVIVT01010025001 assembled CDS                                       300   1e-81
GSVIVT01031663001 assembled CDS                                       238   5e-63
GSVIVT01019126001 assembled CDS                                       187   1e-47
GSVIVT01011347001 assembled CDS                                       186   1e-47
GSVIVT01019110001 assembled CDS                                       159   3e-39
GSVIVT01029266001 assembled CDS                                       138   6e-33
GSVIVT01011755001 assembled CDS                                       130   1e-30

>GSVIVT01025749001 assembled CDS
          Length = 557

 Score =  403 bits (1035), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/303 (64%), Positives = 231/303 (76%), Gaps = 11/303 (3%)

Query: 1   MINGKDVYDVIAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
           MI   D+Y V+ ++VPLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFIS
Sbjct: 1   MIAITDLYHVLTSVVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  SNDPYAMNYRFIAADSLQKVVILAALFLWQAFSKNGSLEWMITLFSLSTLPNTLVMGIPL 120
           +NDPYAMNYRFIAAD+LQK+++L  L +W   S  G LEW ITLFSLSTLPNTLVMGIPL
Sbjct: 61  TNDPYAMNYRFIAADTLQKIIVLVVLAIWSRVSSRGCLEWSITLFSLSTLPNTLVMGIPL 120

Query: 121 LKAMYGDFSGSLMVQIVVLQSVIWYTLMLFMFEYRGAKLLISDQFPETAGSITSFKVDSD 180
           LK MYG++SG+LMVQIVVLQ +IWYTLMLF+FEYRGA+LLI +QFP+TAGSI SF+VDSD
Sbjct: 121 LKGMYGEYSGTLMVQIVVLQCIIWYTLMLFLFEYRGARLLIVEQFPDTAGSIISFRVDSD 180

Query: 181 VVSLNGREPLQADAEIGDDGKLHXXXXXXXXXXXXXXFNKSHGLS---TMTPRASNLTGV 237
           V+SL+G+EPLQ +AE+G+DGKLH                +SHG +   ++TPR SNLT  
Sbjct: 181 VISLDGKEPLQTEAEVGEDGKLHVTVRKSTSSRSEIFSRRSHGPNSGVSLTPRPSNLTNA 240

Query: 238 EIYSVQSSREPTPRASSFNQTDFYAMLSSKVASPKHGYTNSFQGDIFSLQSSKGATPRTS 297
           EIYS+QSSR PTPR SSFN TDFY+M     A P  G        IFS     GA  + +
Sbjct: 241 EIYSLQSSRNPTPRGSSFNHTDFYSMGGGYPAPPSAG--------IFSPVGGPGAKKKAN 292

Query: 298 NFD 300
             D
Sbjct: 293 GAD 295


>GSVIVT01025748001 assembled CDS
          Length = 555

 Score =  399 bits (1026), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/303 (63%), Positives = 232/303 (76%), Gaps = 11/303 (3%)

Query: 1   MINGKDVYDVIAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
           MI+  D+Y V+ A+VPLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFIS
Sbjct: 1   MISITDLYHVLTAVVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  SNDPYAMNYRFIAADSLQKVVILAALFLWQAFSKNGSLEWMITLFSLSTLPNTLVMGIPL 120
           +N+PYAMNYRFIAAD+LQK+++L  L +W   S  G LEW ITLFSLSTLPNTLVMGIPL
Sbjct: 61  TNNPYAMNYRFIAADTLQKIIVLVVLAIWSRTSSRGCLEWSITLFSLSTLPNTLVMGIPL 120

Query: 121 LKAMYGDFSGSLMVQIVVLQSVIWYTLMLFMFEYRGAKLLISDQFPETAGSITSFKVDSD 180
           +K MYG+ SG+LMVQIVVLQ +IWYTLMLF+FEYRGA+LLI +QFP+TAGSI SF+VDSD
Sbjct: 121 MKGMYGEASGTLMVQIVVLQCIIWYTLMLFLFEYRGARLLIVEQFPDTAGSIISFRVDSD 180

Query: 181 VVSLNGREPLQADAEIGDDGKLHXXXXXXXXXXXXXXFNKSHGLS---TMTPRASNLTGV 237
           ++SL+G+EPLQ +AE+G+DGKLH                +SHG +   ++TPR SNLT  
Sbjct: 181 IISLDGKEPLQTEAEVGEDGKLHVTVRKSTSSRSEIFSRRSHGPNSGVSLTPRPSNLTNA 240

Query: 238 EIYSVQSSREPTPRASSFNQTDFYAMLSSKVASPKHGYTNSFQGDIFSLQSSKGATPRTS 297
           EIYS+QSSR PTPR SSFN TDFY+M     A P  G        IFS  +  GA  + +
Sbjct: 241 EIYSLQSSRNPTPRGSSFNHTDFYSMGGGYPAPPSAG--------IFSPVAGPGAKKKAN 292

Query: 298 NFD 300
             D
Sbjct: 293 GAD 295


>GSVIVT01010025001 assembled CDS
          Length = 527

 Score =  300 bits (767), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/344 (48%), Positives = 221/344 (64%), Gaps = 35/344 (10%)

Query: 1   MINGKDVYDVIAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
           MI+  D Y V+ A+VPLY AM++AYGSV+W KIF+P+QCSGINRFVAVFAVP+LSFHFIS
Sbjct: 1   MISADDFYKVMCAMVPLYFAMLVAYGSVKWCKIFSPEQCSGINRFVAVFAVPVLSFHFIS 60

Query: 61  SNDPYAMNYRFIAADSLQKVVILAALFLWQAFSKNGSLEWMITLFSLSTLPNTLVMGIPL 120
            N+PY M+ +FI AD+L K+++L  L +W    K G L+W+ITLFSL+TLPNTLVMGIPL
Sbjct: 61  QNNPYEMDTKFIVADTLSKLLVLVLLSVWAILFKGG-LDWLITLFSLATLPNTLVMGIPL 119

Query: 121 LKAMYGDFSGSLMVQIVVLQSVIWYTLMLFMFEYRGAKLLISDQFP-ETAGSITSFKVDS 179
           L AMYGDF+ SLMVQ+VVLQ +IWYTL+LF+FEYR A LLI +QFP  TA SI+ F++D 
Sbjct: 120 LNAMYGDFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATLLIKNQFPGSTAASISKFEIDG 179

Query: 180 DVVSLNGREPLQADAEIGDDGKLHXXXXXXXXXXXXXXFNKSHGLSTMTPRASNLTGVEI 239
           DV+SL+GR+P++ ++EI  +G++                + S G+   TPRASNL+G EI
Sbjct: 180 DVISLDGRDPVRTESEIDGNGRIRVRIRRSTSSAPDSALSSSMGI---TPRASNLSGAEI 236

Query: 240 YSVQS------------------SREPTPRASSFNQTDFYAMLSSK----VASPKHGYTN 277
           +SV +                  S +PTPRAS+FN+ D   + ++     V SP  G   
Sbjct: 237 FSVNTPAPLHDPRLSGYASSDAYSLQPTPRASNFNELDTTTITTTNTPFWVRSPVAGKVY 296

Query: 278 SFQGDIFSLQSSKGATPRTSNFDEEMLKVNNGKKTRGARSMSGE 321
             Q   FS       +P   N          G + +G + + GE
Sbjct: 297 RQQSPAFSGVRMVWESPGKCN--------GGGGERQGCKDVVGE 332


>GSVIVT01031663001 assembled CDS
          Length = 463

 Score =  238 bits (606), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 108/171 (63%), Positives = 139/171 (81%)

Query: 1   MINGKDVYDVIAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
           MI+ KD+Y V++A+VPLYV M LAY SV+WW +F+PDQC+GINRFVA+FA+PLLSF  IS
Sbjct: 1   MISIKDLYGVLSAVVPLYVTMFLAYASVKWWNVFSPDQCAGINRFVAIFAIPLLSFEVIS 60

Query: 61  SNDPYAMNYRFIAADSLQKVVILAALFLWQAFSKNGSLEWMITLFSLSTLPNTLVMGIPL 120
             +PY M++ FIAAD + KV+IL  LF W  FSK GSL+W ITLFS+STLPNTLVMGIPL
Sbjct: 61  RINPYKMDFLFIAADGVSKVLILIILFSWAKFSKRGSLDWTITLFSISTLPNTLVMGIPL 120

Query: 121 LKAMYGDFSGSLMVQIVVLQSVIWYTLMLFMFEYRGAKLLISDQFPETAGS 171
           LK+MYGD    L++Q VVLQ +IWYTL+LF+FEYR A++ I ++F +++ S
Sbjct: 121 LKSMYGDDKEYLIIQAVVLQCIIWYTLLLFLFEYREARIFILNKFKDSSVS 171


>GSVIVT01019126001 assembled CDS
          Length = 356

 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 113/155 (72%)

Query: 1   MINGKDVYDVIAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
           MI  +DVY V+ A++PLYVA++L YGSV+WW+IFTPDQC  INR V  F +PL +F F +
Sbjct: 1   MIGWEDVYKVVVAMLPLYVALVLGYGSVKWWRIFTPDQCDAINRLVCYFTLPLFTFEFTA 60

Query: 61  SNDPYAMNYRFIAADSLQKVVILAALFLWQAFSKNGSLEWMITLFSLSTLPNTLVMGIPL 120
             DP+ MNY FI AD++ K++I+  L LW   S  GS  W IT FSL+TL N+LV+G+PL
Sbjct: 61  HVDPFKMNYLFIGADAVSKLIIVLVLALWAKCSSKGSYCWSITSFSLATLTNSLVVGVPL 120

Query: 121 LKAMYGDFSGSLMVQIVVLQSVIWYTLMLFMFEYR 155
           +KAMYG     L+VQ  V+Q++IW TL+LF+ E+R
Sbjct: 121 IKAMYGPLGVDLVVQSSVVQAIIWLTLLLFVLEFR 155


>GSVIVT01011347001 assembled CDS
          Length = 357

 Score =  186 bits (473), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 111/145 (76%)

Query: 1   MINGKDVYDVIAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
           MI+  DVY V+AA +PLY  MILAY SV+WWKIFTP+QCSGIN+FVA F++PLLSF  IS
Sbjct: 1   MISLADVYHVVAATIPLYFVMILAYISVKWWKIFTPEQCSGINKFVAKFSIPLLSFQLIS 60

Query: 61  SNDPYAMNYRFIAADSLQKVVILAALFLWQAFSKNGSLEWMITLFSLSTLPNTLVMGIPL 120
            N+PY MN R I +D LQK++ L  L      +  GSL W+IT  SLSTLPNTL++GIPL
Sbjct: 61  ENNPYQMNMRLILSDFLQKLLALILLATIAKINSRGSLTWVITGLSLSTLPNTLILGIPL 120

Query: 121 LKAMYGDFSGSLMVQIVVLQSVIWY 145
           LKAMYGD +  L+ QIVVLQS++WY
Sbjct: 121 LKAMYGDKAAGLLSQIVVLQSLVWY 145


>GSVIVT01019110001 assembled CDS
          Length = 361

 Score =  159 bits (401), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 112/168 (66%), Gaps = 1/168 (0%)

Query: 1   MINGKDVYDVIAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
           MI   DVY V+ A+ PLYVA++L Y SVRWW +F+ DQC+ INRF+  F  P  SF F S
Sbjct: 1   MIEWGDVYKVVEAMAPLYVALLLGYASVRWWHMFSSDQCAAINRFICYFIFPFYSFDFTS 60

Query: 61  SNDPYAMNYRFIAADSLQKVVILAALFLW-QAFSKNGSLEWMITLFSLSTLPNTLVMGIP 119
             DP++MNY+++ AD + K + +AAL LW +  S+ GS  W +T FSL T+ N+L +G+P
Sbjct: 61  HIDPFSMNYKYMGADIMSKFICVAALGLWCKCSSRTGSYGWFVTCFSLCTMTNSLFIGVP 120

Query: 120 LLKAMYGDFSGSLMVQIVVLQSVIWYTLMLFMFEYRGAKLLISDQFPE 167
           +L+AMYG    +L++Q  V+Q +I+ T+ L + E+  + + ++   PE
Sbjct: 121 ILEAMYGRTGVNLVLQASVVQVIIYSTVFLILLEFWKSFVSLNKTIPE 168


>GSVIVT01029266001 assembled CDS
          Length = 437

 Score =  138 bits (347), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 100/172 (58%), Gaps = 52/172 (30%)

Query: 252 ASSFNQTDFYAMLSSKVASPKH----GYTNSFQGDIFSLQSSKGATPRTSNFDEEMLKVN 307
           ASSFNQTDFYAM +SK ASP+H    G       D+FSLQ                    
Sbjct: 88  ASSFNQTDFYAMFASKTASPRHGSIGGVGAGGGADVFSLQ-------------------- 127

Query: 308 NGKKTRGARSMSGELFNG--YSAYPLPNPMFSGSTGSTGPRKKETNGGSVVTPNNSNNKE 365
                    SMSGELF+G   S+YP PNPMFSGST S GP+KKE+ GG  +      NKE
Sbjct: 128 ---------SMSGELFHGGLLSSYPPPNPMFSGST-SGGPKKKESGGGGAMP-----NKE 172

Query: 366 LHMFVWSSSASPVSEGNLRHAVNGSASTDFG--------LQQETPSLAASRG 409
           LHMFVWSSSASPVSEGNLRH VN + S DFG        LQQE   +AASRG
Sbjct: 173 LHMFVWSSSASPVSEGNLRHTVNRAESADFGVIDSSKAVLQQE---IAASRG 221



 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 65/69 (94%)

Query: 1  MINGKDVYDVIAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
          MI GKD+YDV+AAIVPLYVAMILAYGSVRWWKIFTP+QC+GINRFVAVFAVPLLSFHFIS
Sbjct: 1  MIRGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPEQCAGINRFVAVFAVPLLSFHFIS 60

Query: 61 SNDPYAMNY 69
           ND Y MNY
Sbjct: 61 LNDIYNMNY 69


>GSVIVT01011755001 assembled CDS
          Length = 110

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 65/70 (92%)

Query: 1  MINGKDVYDVIAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
          MI+  D+Y V+ A++PLYVAMILAYGSVRWWKIF+PDQCSGINRFVA+FAVPLLSFHFIS
Sbjct: 1  MISWNDLYVVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61 SNDPYAMNYR 70
           N+PYAMN+R
Sbjct: 61 QNNPYAMNFR 70