Jatropha Genome Database

JcCB0551471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0551471.10 - phase: 0 /partial
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029796001 assembled CDS                                        69   6e-13
GSVIVT01001177001 assembled CDS                                        69   8e-13
GSVIVT01018008001 assembled CDS                                        66   5e-12
GSVIVT01018009001 assembled CDS                                        55   1e-08
GSVIVT01015444001 assembled CDS                                        50   5e-07
GSVIVT01001178001 assembled CDS                                        47   4e-06

>GSVIVT01029796001 assembled CDS
          Length = 185

 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 59  DCITPLLNMSDCLSYVQEPSTAKVPDKNCCPELAGLVDSNPICLCQLLGNSSLTESFGIK 118
           DC + +LNM+DCLSYV   STA  P+  CC  L  ++ ++  CLC+   +S+    +G+ 
Sbjct: 35  DCSSLVLNMADCLSYVSNGSTASKPEGTCCTGLKTVLKADAECLCEAFKSSA---QYGVV 91

Query: 119 ININRALKLPSVCGVETPPVSTCAGSF 145
           +N+ +A+ LP+ C V  P VS C  S 
Sbjct: 92  LNVTKAIYLPTACRVSAPSVSNCGLSI 118


>GSVIVT01001177001 assembled CDS
          Length = 163

 Score = 68.9 bits (167), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 4/87 (4%)

Query: 58  NDCITPLLNMSDCLSYVQEPSTAKVPDKNCCPELAGLVDSNPICLCQLLGNSSLTESFGI 117
           + C   +++MS CL+Y+   S+   P   CC +LA +V S P CLC++L       S GI
Sbjct: 26  SSCTNVIISMSPCLNYITGNSS--TPSSGCCTQLASVVRSQPQCLCEVLNGGG--SSLGI 81

Query: 118 KININRALKLPSVCGVETPPVSTCAGS 144
           +IN  +AL LP+ C V+TPP+S C  S
Sbjct: 82  QINQTQALALPTACSVQTPPISRCNAS 108


>GSVIVT01018008001 assembled CDS
          Length = 153

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 4/84 (4%)

Query: 58  NDCITPLLNMSDCLSYVQEPSTAKVPDKNCCPELAGLVDSNPICLCQLLGNSSLTESFGI 117
           + C + +++MS CL+Y+   S+   P   CC +LA +V S P CLC++L       S GI
Sbjct: 10  SSCTSVIISMSPCLNYISGNSS--TPSSGCCTQLASVVRSQPQCLCEVLNGGG--SSVGI 65

Query: 118 KININRALKLPSVCGVETPPVSTC 141
            IN  +AL LP  C V+TPP+S C
Sbjct: 66  NINQTQALALPGACNVQTPPLSRC 89


>GSVIVT01018009001 assembled CDS
          Length = 118

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 58  NDCITPLLNMSDCLSYVQEPSTAKVPDKNCCPELAGLVDSNPICLCQLLGNSSLTESFGI 117
           + C T L+ M+ CL+Y+   S++         +LA +V S P CLC  L       + GI
Sbjct: 26  SGCTTVLIGMAPCLNYITGSSSSPSSSCC--SQLASVVQSQPRCLCVALNGGG--AALGI 81

Query: 118 KININRALKLPSVCGVETPPVSTCAGSFEF 147
            IN   AL LP  C V+TPPVS C G  + 
Sbjct: 82  TINRTLALALPGACNVQTPPVSQCDGKAQM 111


>GSVIVT01015444001 assembled CDS
          Length = 260

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 58  NDCITPLLNMSDCLSYVQEPSTAKVPDKNCCPELAGLVDSNPICLCQLLGNSSLTESFGI 117
            DC   L N++ C+ +V    TAK P + CC +   +  S P CLC L+  S+   S G+
Sbjct: 70  KDCADQLTNLAACIPFVS--GTAKKPTQQCCQDTQKVKSSKPKCLCVLIKEST-DPSLGL 126

Query: 118 KININRALKLPSVCGVETPPVSTC 141
            +N   AL++PS C ++   VS C
Sbjct: 127 PVNTTLALQMPSACNIDA-KVSDC 149


>GSVIVT01001178001 assembled CDS
          Length = 303

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 58  NDCITPLLNMSDCLSYVQEPSTAKVPDKNCCPELAGLVDSNPICLCQLLGNSSLTESFGI 117
           + C   L+ ++ CL+Y+   S+      +CC +LA +V S P CLC  L +       GI
Sbjct: 142 SGCTRVLIGLAPCLNYISGNSSTPS--SSCCSQLANVVQSQPQCLCAALNSGG--AGLGI 197

Query: 118 KININRALKLPSVCGVETPPVSTC 141
            IN   AL+LP  C V+TP VS C
Sbjct: 198 TINQTLALQLPGACNVKTPSVSQC 221