Jatropha Genome Database

JcCB0551271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0551271.10 - phase: 0 /partial
         (209 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025727001 assembled CDS                                       277   2e-75
GSVIVT01036773001 assembled CDS                                       115   2e-26
GSVIVT01036775001 assembled CDS                                       105   1e-23

>GSVIVT01025727001 assembled CDS
          Length = 581

 Score =  277 bits (709), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/209 (66%), Positives = 161/209 (77%)

Query: 1   MEILKKADIXXXXXXXXXXXXVANCSKFAELLSSGVDIFVNDSFSLSHKILASTVAITRF 60
           ME L+KADI            +ANCSKFAE LSS VDIFVNDSFS SHKILASTV + RF
Sbjct: 83  MEELEKADILLLENLSEFKGELANCSKFAEQLSSVVDIFVNDSFSNSHKILASTVGVPRF 142

Query: 61  CSACVAGFHFEESLYQMKNAVKMNKRPYIAIIGGGNLYDKAASLHLLASKCDGLVFVGIM 120
           CSACVAGFHFEESL Q+K A ++NK+P IAIIGGGNL+DKA+++  LAS+CDGLVFVG+M
Sbjct: 143 CSACVAGFHFEESLCQLKMAAQINKKPCIAIIGGGNLFDKASAVRYLASRCDGLVFVGMM 202

Query: 121 SFQIMHALGYSVPSSLIEPQAHKAALDIIHFAQDRNIPILCPKDFWCVQGFAPKQMEVFP 180
           +FQIMHALG  VP +L+E    K A +I+  AQ+R IPIL PKDFWC+    PKQME+FP
Sbjct: 203 AFQIMHALGLHVPLNLLEGGPLKEASNIVQLAQNRKIPILYPKDFWCMTNDFPKQMEIFP 262

Query: 181 AHDILKGWSPVDLGPKSLDEIYSLLLKCK 209
           A+ IL GW PVD GPK+LDEI SLL  CK
Sbjct: 263 AYGILDGWIPVDPGPKALDEINSLLTGCK 291


>GSVIVT01036773001 assembled CDS
          Length = 405

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 94/176 (53%), Gaps = 1/176 (0%)

Query: 24  NCSKFAELLSSGVDIFVNDSFSLSHKILASTVAITRFCSACVAGFHFEESLYQMKNAVKM 83
           N  +FA+ L+S  D++VND+F  +H+  AST  +T+F    VAGF  ++ L  +  AV  
Sbjct: 129 NEPEFAKKLASIADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSS 188

Query: 84  NKRPYIAIIGGGNLYDKAASLHLLASKCDGLVFVGIMSFQIMHALGYSVPSSLIEPQAHK 143
            KRP+ AI+GG  +  K   +  L  KCD L+  G M F    A G SV SSL+E     
Sbjct: 189 PKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLS 248

Query: 144 AALDIIHFAQDRNIPILCPKDFWCVQGFAPK-QMEVFPAHDILKGWSPVDLGPKSL 198
            A  ++  A+ + + +L P D      FAP    ++ PA  I  GW  +D+GP S+
Sbjct: 249 LATSLLEKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSI 304


>GSVIVT01036775001 assembled CDS
          Length = 349

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 1/176 (0%)

Query: 24  NCSKFAELLSSGVDIFVNDSFSLSHKILASTVAITRFCSACVAGFHFEESLYQMKNAVKM 83
           N  +FA+ L+S  D++VND+F  +H+  AST  + ++    VAGF  ++ L  +  AV  
Sbjct: 78  NDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSN 137

Query: 84  NKRPYIAIIGGGNLYDKAASLHLLASKCDGLVFVGIMSFQIMHALGYSVPSSLIEPQAHK 143
            KRP+ AI+GG  +  K   +  L  K D L+  G M F    A GY V SSL+E     
Sbjct: 138 PKRPFAAIVGGSKVSSKIGVIESLLGKVDVLLLGGGMIFTFYKAQGYGVGSSLVEEDKLD 197

Query: 144 AALDIIHFAQDRNIPILCPKDFWCVQGFAPK-QMEVFPAHDILKGWSPVDLGPKSL 198
            A  ++  A+ + + +L P D      FA     +V PA  I  GW  +D+GP S+
Sbjct: 198 LATSLLEKAKSKGVSLLLPADVVIADKFAADANSKVVPASCIPDGWMGLDIGPDSI 253