Jatropha Genome Database

JcCB0551261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0551261.10 - phase: 0 
         (332 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028311001 assembled CDS                                       285   2e-77
GSVIVT01005618001 assembled CDS                                       244   5e-65
GSVIVT01024746001 assembled CDS                                       109   2e-24

>GSVIVT01028311001 assembled CDS
          Length = 269

 Score =  285 bits (730), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 144/268 (53%), Positives = 187/268 (69%), Gaps = 14/268 (5%)

Query: 14  AELFGNLGGLLRICLFQIVSMGPIPSHFAFIMDGNRRYAKKGNLKLGAGHQAGFESLISI 73
           +++F NLG  LR C+F ++S+GPIP+H AFIMDGNRR+AKK NL  GAGH+ G+ +L+S+
Sbjct: 10  SQIFENLGTFLRKCIFSVLSVGPIPNHIAFIMDGNRRFAKKQNLIEGAGHKVGYLALMSM 69

Query: 74  LMYCYELGVKYVTIYAFSIDNFKRRPDEVKDLMDLMLEKIDEMLKEESMAKQYGIRVYFK 133
           L Y YELGVKYVTIYAFSI+NFKRRP+EV+ +MDLM EKI++++ EES+   +G+RV+F 
Sbjct: 70  LRYSYELGVKYVTIYAFSIENFKRRPEEVQSVMDLMQEKIEQLINEESILNHFGVRVHFI 129

Query: 134 DEVDESQATAASANCSGLIREVGGVDTENSMVMHAVHTSYEDQAVMANRTGHGVAPIEES 193
             +    A    A    ++     V   NS  + ++  +Y       N   H V   E  
Sbjct: 130 GNLKLLSAPVRLAAERAML-----VTACNSKAVLSICVAYTS----TNEIMHAVE--ESC 178

Query: 194 EKMQGECSMIKL--VD-IEKYMYMAVAPEPDILVRSSGETRLSNFLLWQSSNCLLYSPDA 250
            K   E   +K   VD IEK++YMAVAP+PDIL+R+SGETRLSNFLLWQS  C LYSP  
Sbjct: 179 VKKWDEIRELKASGVDYIEKHLYMAVAPDPDILIRTSGETRLSNFLLWQSQYCYLYSPSV 238

Query: 251 LWPEIGLWHLVWAILDFQRNHSYLEKKR 278
           LWPEIG WHL+WA+L+FQRNH YLEKK+
Sbjct: 239 LWPEIGFWHLLWAVLNFQRNHFYLEKKK 266


>GSVIVT01005618001 assembled CDS
          Length = 242

 Score =  244 bits (622), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 127/252 (50%), Positives = 169/252 (67%), Gaps = 38/252 (15%)

Query: 31  IVSMGPIPSHFAFIMDGNRRYAKKGNLKLGAGHQAGFESLISILMYCYELGVKYVTIYAF 90
           + S+  IP+H AFIMDGNRRYAKK  L+ GAG++AGF +L+S++ YCY+LGVKY+ IYAF
Sbjct: 22  VFSVSHIPNHIAFIMDGNRRYAKKWKLEEGAGYKAGFLALLSMIKYCYKLGVKYIAIYAF 81

Query: 91  SIDNFKRRPDEVKDLMDLMLEKIDEMLKEESMAKQYGIRVYFKDEVDESQATAASANCSG 150
           SIDNF+RRP EV+ +MDLM EKI  +LKE+S+  Q+   VY                   
Sbjct: 82  SIDNFRRRPQEVQYVMDLMHEKIQGLLKEQSIVNQHVCVVY------------------- 122

Query: 151 LIREVGGVDTENSMVMHAVHTSYEDQ----AVMANRTGHGVAPIEESEKMQGECSMIKLV 206
                    T +  ++H+V  S +D+     V+    G  V   +E +    + S+IKLV
Sbjct: 123 ---------TSSDEIVHSVQESCKDKWGETQVLNPSKGCNVGGDDEIQ----DYSIIKLV 169

Query: 207 DIEKYMYMAVAPEPDILVRSSGETRLSNFLLWQSSNCLLYSPDALWPEIGLWHLVWAILD 266
           D+EK+MYM  AP+PDIL+R+SG   LSNFLLWQ++ CLLY P ALWPE+GL HL+WA+L+
Sbjct: 170 DLEKHMYMRFAPDPDILIRTSG--CLSNFLLWQATTCLLYCPTALWPEVGLRHLMWAVLN 227

Query: 267 FQRNHSYLEKKR 278
           FQRNHSYLEKK+
Sbjct: 228 FQRNHSYLEKKK 239


>GSVIVT01024746001 assembled CDS
          Length = 233

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 25/243 (10%)

Query: 37  IPSHFAFIMDGNRRYAKKGNLKLGAGHQAGFESLISILMYCYELGVKYVTIYAFSIDNFK 96
           +P H A IMDGN R+A+K  L   +GHQAG  SL  ++  C + G+K ++++AFS DN+ 
Sbjct: 1   MPEHVAVIMDGNVRWAQKRGLPAASGHQAGVRSLRELVGLCCKWGIKVLSVFAFSYDNWS 60

Query: 97  RRPDEVKDLMDLMLEKIDEMLKEE-SMAKQYGIRVYFKDEVDESQATAASANCSGLIREV 155
           R   EV  LM L    I+ ++K E     + GIRV    ++     +        LI +V
Sbjct: 61  RSEGEVGFLMSL----IERVVKAELPNFGREGIRVSVIGDL-----SKLPEQLQKLIIDV 111

Query: 156 GGVDTENSMVMHAVHTSYEDQAVMAN-------RTGHGVAPIEESEKMQGECSMIKLVDI 208
                ENS +   V  SY  Q  +         +   G+   E+  K         L++ 
Sbjct: 112 EETTKENSRLQFIVALSYSGQCDILQACKNIGYKVKDGLIEPEDINK--------SLIEQ 163

Query: 209 EKYMYMAVAPEPDILVRSSGETRLSNFLLWQSSNCLLYSPDALWPEIGLWHLVWAILDFQ 268
           E        P PD+L+R+SGE R+SNF+LWQ +   L     LWP+ G    V A+  FQ
Sbjct: 164 ELQTNCTEFPFPDLLIRTSGELRVSNFMLWQIAYTELCFFSTLWPDFGKDEFVEALSSFQ 223

Query: 269 RNH 271
           +  
Sbjct: 224 KRQ 226