Jatropha Genome Database

JcCB0550991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0550991.10 - phase: 0 /partial
         (183 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011679001 assembled CDS                                       199   8e-52
GSVIVT01008453001 assembled CDS                                       118   2e-27

>GSVIVT01011679001 assembled CDS
          Length = 384

 Score =  199 bits (505), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/184 (57%), Positives = 127/184 (69%), Gaps = 17/184 (9%)

Query: 1   MERDFLGLNSKEPLAVVKEEVNSDAYKEIGFSKGSGIHWPFSNKVSALPHLNSFKVALED 60
           MERDF+GL+SKEPLAVVKEE+      E  F+KGSGI WPFSNK+SALPH  SFK A ED
Sbjct: 1   MERDFMGLSSKEPLAVVKEEI-----IEGAFTKGSGIQWPFSNKISALPHFMSFKTAQED 55

Query: 61  KTKRIVSDSLASPGFLSISTADASDPSQRQFMPEIQKSFNHDRQGGSHFTLTAYPAQHEV 120
           K+K++ SDSL + GF         DPS +    E+QK+ N DRQGGS F +TAYP QH+ 
Sbjct: 56  KSKKVASDSLVTSGF---------DPSNKCPAGEMQKAVNPDRQGGS-FAVTAYPVQHDS 105

Query: 121 HSV-HHPLDVKMFPVSNHGSLISMAKPFSSKNYYATSSQNMVGNTTKPQLLGGIPVTTPQ 179
           H + HHP DVKMFPVSN    +SM  PF  K ++A + QNMVG   K QLLGGIPV+ P 
Sbjct: 106 HLMNHHPHDVKMFPVSNQTISVSMGNPF-FKTHFAAAGQNMVGAALKQQLLGGIPVSAPH 164

Query: 180 TIIP 183
            I+P
Sbjct: 165 GILP 168


>GSVIVT01008453001 assembled CDS
          Length = 368

 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 105/183 (57%), Gaps = 11/183 (6%)

Query: 1   MERDFLGLNSKEPLAVVKEEVNSDAYKEIGFSKGSGIHWPFSNKVSALPHLNSFKVALED 60
           MERDFL L S + L   KEE + D+      ++G G+ WPF NKVSA+PH  SFK   ED
Sbjct: 1   MERDFLCLGSGKVLPSGKEE-SGDSVP----ARGLGMQWPFPNKVSAIPHFLSFKAVQED 55

Query: 61  KTKRIVSDS-LASPGFLSISTADASDPSQRQFMPEIQKSFNHDRQGGSHFTLTAYPAQH- 118
           + +R V D   AS G +S+STADA + +Q+     +QK+ N ++Q GS F +T YP QH 
Sbjct: 56  RPRRSVYDRPFASSGLMSVSTADALESNQQPHPGVLQKNLNLEKQVGSQFVMTGYPLQHL 115

Query: 119 EVHSVHHPLDVKMFPVS---NHGSLISMAKPFSSKNYYATSSQNMVGNTTKPQLLGGIPV 175
           +  SV    +V  FP S   NH   ++ + P   ++  A S  ++  +  KPQ LGG+PV
Sbjct: 116 DARSVRRAHEVGKFPASNQPNHSISVAFSNPV-LQSQIAFSGPSVGSSAVKPQPLGGVPV 174

Query: 176 TTP 178
             P
Sbjct: 175 AAP 177