Jatropha Genome Database

JcCB0550651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0550651.10 - phase: 0 /partial
         (91 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027922001 assembled CDS                                       176   1e-45
GSVIVT01029978001 assembled CDS                                       176   2e-45
GSVIVT01005190001 assembled CDS                                        51   1e-07
GSVIVT01030588001 assembled CDS                                        48   9e-07
GSVIVT01037657001 assembled CDS                                        47   2e-06

>GSVIVT01027922001 assembled CDS
          Length = 508

 Score =  176 bits (447), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 89/91 (97%)

Query: 1   VPPTLRFVMDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVESLNMEERMTLCN 60
           VPPTLRFVMDGEMP+YLLAKDLILQIIGEISV+GATYKSMEFVGTTVESL MEERMTLCN
Sbjct: 232 VPPTLRFVMDGEMPNYLLAKDLILQIIGEISVSGATYKSMEFVGTTVESLTMEERMTLCN 291

Query: 61  MVVEAGGKNGVVPADSTTFKYLEDKTSVPYQ 91
           MV+EAGGKNGVVPADSTT KYLEDKTS+PY+
Sbjct: 292 MVIEAGGKNGVVPADSTTHKYLEDKTSLPYE 322


>GSVIVT01029978001 assembled CDS
          Length = 528

 Score =  176 bits (447), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 88/91 (96%)

Query: 1   VPPTLRFVMDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVESLNMEERMTLCN 60
           VPPTLRFVMDGEMPDYLLAKDLILQIIGEISV+GATYKSMEFVG+TVESL MEERMTLCN
Sbjct: 232 VPPTLRFVMDGEMPDYLLAKDLILQIIGEISVSGATYKSMEFVGSTVESLTMEERMTLCN 291

Query: 61  MVVEAGGKNGVVPADSTTFKYLEDKTSVPYQ 91
           MVVEAGGKNGVVPADSTT KYLEDKT VPY+
Sbjct: 292 MVVEAGGKNGVVPADSTTHKYLEDKTDVPYE 322


>GSVIVT01005190001 assembled CDS
          Length = 918

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%)

Query: 1   VPPTLRFVMDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVESLNMEERMTLCN 60
           +P  + F + G++ D + A DL+L +   +   G   K +EF G  +  L++ +R T+ N
Sbjct: 261 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMRELSLADRATIAN 320

Query: 61  MVVEAGGKNGVVPADSTTFKYLE 83
           M  E G   G  P D  T +YL+
Sbjct: 321 MSPEYGATMGFFPVDHVTLQYLK 343


>GSVIVT01030588001 assembled CDS
          Length = 987

 Score = 47.8 bits (112), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%)

Query: 1   VPPTLRFVMDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVESLNMEERMTLCN 60
           +P  + F + G++ + + A DL+L +   +   G   K +EF G  +  L++ +R T+ N
Sbjct: 332 LPGVVGFKLTGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMAELSLADRATIAN 391

Query: 61  MVVEAGGKNGVVPADSTTFKYLE 83
           M  E G   G  P D  T +YL+
Sbjct: 392 MSPEYGATMGFFPVDRVTLQYLK 414


>GSVIVT01037657001 assembled CDS
          Length = 1009

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%)

Query: 1   VPPTLRFVMDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVESLNMEERMTLCN 60
           +P  + F + G++   + A DL+L +   +   G   K +EF G  +  L++ +R T+ N
Sbjct: 354 LPGVVGFKLSGKLCSGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGELSLADRATIAN 413

Query: 61  MVVEAGGKNGVVPADSTTFKYLE 83
           M  E G   G  P D  T +YL+
Sbjct: 414 MSPEYGATMGFFPVDHVTLQYLK 436