Jatropha Genome Database

JcCB0550571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0550571.10 + phase: 1 /pseudo/partial
         (280 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016580001 assembled CDS                                       357   3e-99
GSVIVT01025006001 assembled CDS                                       353   6e-98
GSVIVT01016191001 assembled CDS                                       251   2e-67
GSVIVT01016193001 assembled CDS                                       250   6e-67
GSVIVT01033664001 assembled CDS                                       248   2e-66

>GSVIVT01016580001 assembled CDS
          Length = 412

 Score =  357 bits (917), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 175/257 (68%), Positives = 207/257 (80%), Gaps = 8/257 (3%)

Query: 28  ELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESLQNFSSLPLTIAEELFSSCTQA 87
           ELL T+KR+ DTC  L AV  E+ + CE+QLAGPEY S Q  SSL   IAEELF S    
Sbjct: 160 ELLHTKKRQDDTCARLLAVLGEFNVICEIQLAGPEYRSQQGCSSLSPEIAEELFGS---- 215

Query: 88  ILMDTSSS----KKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAYGRF 143
            L+D  S+    +  ++TVDN LSPAHTLLQIQC+DQKGLFYDI+RTSKDC+IQIAYGRF
Sbjct: 216 ELLDNKSNMTKLENGTITVDNFLSPAHTLLQIQCLDQKGLFYDIMRTSKDCNIQIAYGRF 275

Query: 144 SSSVKGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELLVAN 203
           + SVKG+RN+DLFIQ++DGKKIIDP+ Q +LCSRLK EMLHP RV + N+GPD ELLVAN
Sbjct: 276 NPSVKGYRNMDLFIQKTDGKKIIDPEYQASLCSRLKEEMLHPLRVTITNRGPDAELLVAN 335

Query: 204 PVELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPIASA 263
           PVEL GKGRPRVFYDVT  LKTLGICIFS +I RHST +R+WEVYRF L+E+ E P+ S+
Sbjct: 336 PVELSGKGRPRVFYDVTCTLKTLGICIFSGEIVRHSTSNREWEVYRFRLEESVEFPLTSS 395

Query: 264 KSRKQIVDRVRKTLMGW 280
           +SR QIVDRV++TLMGW
Sbjct: 396 RSRSQIVDRVKRTLMGW 412


>GSVIVT01025006001 assembled CDS
          Length = 420

 Score =  353 bits (905), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 175/260 (67%), Positives = 204/260 (78%), Gaps = 7/260 (2%)

Query: 28  ELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESLQNFSSLPLTIAEELF------ 81
           ELL T+KR+ DT   L+AV  E CISCELQLAGPEYE+ Q  SSL   IAEELF      
Sbjct: 161 ELLHTKKRQDDTLEQLYAVLGESCISCELQLAGPEYENHQCVSSLSPGIAEELFRCELSD 220

Query: 82  -SSCTQAILMDTSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAY 140
             S +QA+  D +  KKASV VDN LSPAHTLLQI C+D KGL YDILRT KDC+I+I+Y
Sbjct: 221 KESHSQALSPDMTILKKASVIVDNSLSPAHTLLQIYCVDHKGLVYDILRTLKDCNIKISY 280

Query: 141 GRFSSSVKGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELL 200
           GR S + KG+R++DLFIQQ DGKKI+DP+ Q  LCSRLK EMLHP RV++ N+GPDTELL
Sbjct: 281 GRLSQNTKGYRDLDLFIQQKDGKKIVDPEKQSALCSRLKVEMLHPLRVVISNRGPDTELL 340

Query: 201 VANPVELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPI 260
           VANPVEL GKGRPRVF+D TLALK LGICIFSA+IGRHST DR+WEVY+FLL+ENCE  +
Sbjct: 341 VANPVELSGKGRPRVFFDATLALKMLGICIFSAEIGRHSTSDREWEVYKFLLEENCEFQL 400

Query: 261 ASAKSRKQIVDRVRKTLMGW 280
            +   R QIVDR+R+ LMGW
Sbjct: 401 LNMVGRNQIVDRLRRILMGW 420


>GSVIVT01016191001 assembled CDS
          Length = 416

 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 136/256 (53%), Positives = 171/256 (66%), Gaps = 6/256 (2%)

Query: 27  RELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESLQNFSS-LPLTIAEELFS-SC 84
           R  L T+KR+ DT   L AV  +  +S E++LAGPE  +    SS LP  I EE+FS   
Sbjct: 164 RNELHTKKRQEDTIHRLKAVLGDAMMSVEIELAGPEVTACSQGSSFLPPAITEEIFSLEL 223

Query: 85  TQAILMDTSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAYGRFS 144
                  +++S   SVT+DN LSP+HTL+QI C D KGL YDI+RT KD +IQ +YGRFS
Sbjct: 224 PNERSNGSAASNSLSVTMDNSLSPSHTLIQIICQDHKGLIYDIMRTLKDYNIQTSYGRFS 283

Query: 145 SSVKGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELLVANP 204
           ++ KG    DL ++Q DGKKI+DP  +  L SRL+ E+  P RV V ++GPDTELLVANP
Sbjct: 284 ANAKGMCEADLLVRQVDGKKIVDPNKRNALSSRLRMELFRPLRVAVRSRGPDTELLVANP 343

Query: 205 VELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPIASAK 264
           VEL G+GRP VFYD+TLALK L I IFS +I RH  +DR+WEVYR LLDE     +    
Sbjct: 344 VELSGRGRPLVFYDITLALKLLNIQIFSVEIARHMIQDREWEVYRILLDEGDGFCV---- 399

Query: 265 SRKQIVDRVRKTLMGW 280
           SR +I + VRK LMGW
Sbjct: 400 SRNKIEEGVRKKLMGW 415


>GSVIVT01016193001 assembled CDS
          Length = 416

 Score =  250 bits (638), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 136/256 (53%), Positives = 167/256 (65%), Gaps = 6/256 (2%)

Query: 27  RELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESLQNFSS-LPLTIAEELFS-SC 84
           R  L T++RR +   HL  V  +  ISCE++LAGPE       SS LP  I EE+FS   
Sbjct: 164 RNELHTQERRDEAIYHLKDVLGDAMISCEIELAGPEVTGCSQGSSFLPPAITEEIFSLEL 223

Query: 85  TQAILMDTSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAYGRFS 144
                  + +S    VT+DN LSP+HT + I C DQKG  YDI+RT KD +IQ +YGRF 
Sbjct: 224 PDGHQNGSPASNALIVTMDNSLSPSHTHVHIICQDQKGRIYDIMRTLKDYNIQTSYGRFF 283

Query: 145 SSVKGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELLVANP 204
           ++ KG    DL + Q+DGKK++DP  Q  L SRLK E+  P RV V ++GPDTELLVANP
Sbjct: 284 ANAKGIFEADLLVMQADGKKLVDPNKQNALSSRLKMELFCPLRVAVESRGPDTELLVANP 343

Query: 205 VELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPIASAK 264
           VELCG+GRP VFYD+TLALK L I IFS +IGRH  +DR+WEVYR LLDE       S  
Sbjct: 344 VELCGRGRPLVFYDITLALKILKIQIFSVEIGRHMIQDREWEVYRILLDEE----EGSCV 399

Query: 265 SRKQIVDRVRKTLMGW 280
           SR +I + VRK LMGW
Sbjct: 400 SRNKIEEGVRKKLMGW 415


>GSVIVT01033664001 assembled CDS
          Length = 411

 Score =  248 bits (634), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 134/257 (52%), Positives = 171/257 (66%), Gaps = 7/257 (2%)

Query: 27  RELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESLQNFSSL-PLTIAEELFSSCT 85
           RELL T+KR+ DT  HL  V  +  ISC++ + G E  +    S+L P  I  E+F S  
Sbjct: 158 RELLHTKKRQEDTHNHLKTVLGDAMISCDISMVGSEITACSQTSTLLPSAITREIFGSKF 217

Query: 86  QAILMD--TSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAYGRF 143
           +          S   SVT+DN LSPAHTL+QI C D KGL YD++RT KD +I+I+YGR 
Sbjct: 218 EDEPPSGLPQVSGNISVTMDNSLSPAHTLVQIVCQDHKGLLYDMMRTLKDYNIKISYGRL 277

Query: 144 SSSVKGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELLVAN 203
           ++  + +  VDLFI Q+DGKK++DP  Q  LCSRL+ E+L P RV VV++GPDTELLVAN
Sbjct: 278 TTKPRRNCEVDLFIMQADGKKVVDPYKQNALCSRLQMELLRPLRVAVVSRGPDTELLVAN 337

Query: 204 PVELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPIASA 263
           PVEL GKGRP VF+D+T ALK L +CIFSA+IGR    DR+WEVYR LLDE   + +   
Sbjct: 338 PVELSGKGRPLVFFDITHALKMLNVCIFSAEIGRQMIADREWEVYRILLDEGDGLLVP-- 395

Query: 264 KSRKQIVDRVRKTLMGW 280
             R +I + V K LMGW
Sbjct: 396 --RNKIEEGVWKMLMGW 410