Jatropha Genome Database

JcCB0550111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0550111.10 + phase: 0 /partial
         (478 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016735001 assembled CDS                                       616   e-177
GSVIVT01015063001 assembled CDS                                       561   e-160
GSVIVT01029961001 assembled CDS                                       314   6e-86
GSVIVT01037507001 assembled CDS                                       149   4e-36
GSVIVT01000027001 assembled CDS                                       102   3e-22

>GSVIVT01016735001 assembled CDS
          Length = 1791

 Score =  616 bits (1588), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 313/478 (65%), Positives = 362/478 (75%), Gaps = 31/478 (6%)

Query: 1   MGTWLLALFYLLGNTAADYFCCSLEKLSNLLKLPPAVAGVTLLPLGNGAPDVFASIAAFV 60
           +G WL  LFYLLGNTAADYFCCSLEKLSNLL+LPP VAGV LLPLGNGAPDVFASIAAFV
Sbjct: 150 LGIWLATLFYLLGNTAADYFCCSLEKLSNLLRLPPTVAGVALLPLGNGAPDVFASIAAFV 209

Query: 61  GKNAGAVGLNSVLGGAVFITCIVVGVVSLCVAERRIQIDRACFIRDICFFMFTLLSLGTL 120
           G++ G VGLNSVLGGAVF+TCIV G VSLCVA  R+QIDR CFIRDICFF+FTL+SL  +
Sbjct: 210 GRDTGEVGLNSVLGGAVFVTCIVAGTVSLCVANERVQIDRRCFIRDICFFLFTLISLLVI 269

Query: 121 LIVGNVSIGGAVAFVSIYVIYASAVAANEIFRKHAWRLRLNAIKPLLPVKGSIFSHESEE 180
           L+VG VS+ GA+ FVSIY +YA AVAANEI RKHA RL+L+ I PL+PVKGSIFS E EE
Sbjct: 270 LLVGKVSVVGAIVFVSIYGVYAFAVAANEILRKHARRLKLDVITPLIPVKGSIFSQEGEE 329

Query: 181 DDSVNASLLESDSKGDVPHLQNKLPHWMWASNVAIYSDEVMKESPDDPKDVWGWNEEETV 240
           DDS+ + LL+ +++    HL                               WGW +E   
Sbjct: 330 DDSMYSPLLDIETENGERHL-------------------------------WGWTDEGME 358

Query: 241 NGWXXXXXXXXXXXXEMPXXXXXXXXIPIVEEERWSKGYAVASATLAPILLALLWNTKDN 300
           N              EMP        IPIVEEERWS+ YAVASA+LAP+LLA LWN++D+
Sbjct: 359 NNQPLFSFSKFVSLVEMPLTVPRRLTIPIVEEERWSRAYAVASASLAPVLLAFLWNSQDD 418

Query: 301 VSILNREISYFLGVASGCVFGVLAYLYTKADEPPRKFIFPWVLGGFFMSIIWFYIVANEL 360
           VS      +Y +GV  GC  G+LAY YT +D+PP++F+  WVLGGF MSIIWFYI+A+EL
Sbjct: 419 VSSQGINAAYLVGVMVGCNLGILAYRYTVSDQPPQRFLILWVLGGFIMSIIWFYIIASEL 478

Query: 361 VALLVAYGVIFGINPSLLGLTVLAWGNSMGDLMSNVALATNGGDSLQIAMSGCYAGPMFN 420
           VALLV +GVIFGINPSLLGLTVLAWGNSMGDLMSNVALA NGGD +QIA+SGCYAGPMFN
Sbjct: 479 VALLVGFGVIFGINPSLLGLTVLAWGNSMGDLMSNVALAMNGGDGVQIALSGCYAGPMFN 538

Query: 421 TLVGLGLSMLLGAWSDRPRPYKVPEDSSLFYTMGFLMLGLIWSLVVLPRNDMRPNKIL 478
           TL+GLG+SMLLGA S RP PY VP+DSSLFYT+GFL+ GLIW+LVVLPRNDMRP+K L
Sbjct: 539 TLIGLGVSMLLGACSKRPGPYIVPQDSSLFYTLGFLISGLIWALVVLPRNDMRPSKTL 596


>GSVIVT01015063001 assembled CDS
          Length = 564

 Score =  561 bits (1447), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/481 (61%), Positives = 350/481 (72%), Gaps = 54/481 (11%)

Query: 1   MGTWLLALFYLLGNTAADYFCCSLEKLSNLLKLPPAVAGVTLLPLGNGAPDVFASIAAFV 60
           +G WL+ LFY+LGNTAADYFCCSLEKLS+LLKLPP VAGVTLLPLGNGAPDVFASIAAF+
Sbjct: 106 LGIWLVTLFYMLGNTAADYFCCSLEKLSSLLKLPPTVAGVTLLPLGNGAPDVFASIAAFM 165

Query: 61  GKNAGAVGLNSVLGGAVFITCIVVGVVSLCVAERRIQIDRACFIRDICFFMFTLLSLGTL 120
           GKN+G VGLNSVLGGAVF+TCIVVG VSL VA++R+QID+ CF+RD+CFF+FTLLSLG +
Sbjct: 166 GKNSGEVGLNSVLGGAVFVTCIVVGAVSLGVADKRVQIDKKCFVRDMCFFLFTLLSLGIV 225

Query: 121 LIVGNVSIGGAVAFVSIYVIYASAVAANEIFRKHAWRLRLNAIKPLLPVKGSIFSHESEE 180
           L+VG VS+GGA+AFVSIY++Y   VAANEI RKHA  LRL+A+ PLLPV   IFSH ++E
Sbjct: 226 LLVGEVSVGGAIAFVSIYIVYVFFVAANEILRKHARSLRLDAVTPLLPVTAFIFSHGNDE 285

Query: 181 DDSVNASLLESDSKGDVPHLQNKLPHWMWASNVAIYSDEVMKES-PDDPKDVWGWNEEET 239
           +DSV  SLLESDS+ DVPHLQ KLP WMWAS++AIYS++ +K    ++ K VWGWN+ +T
Sbjct: 286 NDSVYTSLLESDSENDVPHLQTKLPQWMWASHMAIYSNQSLKSGVEENSKPVWGWNDGDT 345

Query: 240 VNGWXXXXXXXXXXXXEMPXXXXXXXXIPIVEEERWSKGYAVASATLAPILLALLWNTKD 299
           +N              EMP        IPIVEEERWSKGYAVAS TLAPILLA LWNT+D
Sbjct: 346 MNNNPYFSCSRLCSFLEMPLILPRRLTIPIVEEERWSKGYAVASVTLAPILLAFLWNTQD 405

Query: 300 NVSILNREISYFLG--VASGCVFGVLAYLYTKADEPPRKFIFPWVLGGFFMSIIWFYIVA 357
           + S+L+  I+Y +   VA G +FG                                    
Sbjct: 406 SPSVLSGGITYLIALLVALGVIFG------------------------------------ 429

Query: 358 NELVALLVAYGVIFGINPSLLGLTVLAWGNSMGDLMSNVALATNGGDSLQIAMSGCYAGP 417
                          INPS+L +TVLAWGNSMGDLMSNVALA NGGD +QIAMSGCYAGP
Sbjct: 430 ---------------INPSILAITVLAWGNSMGDLMSNVALAMNGGDGVQIAMSGCYAGP 474

Query: 418 MFNTLVGLGLSMLLGAWSDRPRPYKVPEDSSLFYTMGFLMLGLIWSLVVLPRNDMRPNKI 477
           MFNTL GLG+SMLLGAWS RP  Y +P D +LF TMGFL+ GLIWSL+VLPR+DMRP K 
Sbjct: 475 MFNTLAGLGISMLLGAWSSRPASYIIPRDGTLFCTMGFLVSGLIWSLIVLPRSDMRPTKT 534

Query: 478 L 478
           L
Sbjct: 535 L 535


>GSVIVT01029961001 assembled CDS
          Length = 519

 Score =  314 bits (805), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 205/476 (43%), Positives = 259/476 (54%), Gaps = 108/476 (22%)

Query: 4   WLLALFYLLGNTAADYFCCSLEKLSNLLKLPPAVAGVTLLPLGNGAPDVFASIAAFVGKN 63
           WL  LFYLLGNTAA+YFC SLE LS +LKL P +AGVTLL LGNGA DVFASI +F   +
Sbjct: 126 WLAVLFYLLGNTAANYFCSSLENLSRVLKLSPTIAGVTLLSLGNGAADVFASIVSFTRTS 185

Query: 64  AGAVGLNSVLGGAVFITCIVVGVVSLCVAERRIQIDRACFIRDICFFMFTLLSLGTLLIV 123
            G VGLN VLGGA F++ +VVG++S+ +  R+I +D+  FIRD+ FF+  L SL  ++I+
Sbjct: 186 DGDVGLNIVLGGAFFVSSVVVGIISIFIGPRQISVDKPSFIRDVIFFLIALASLLVIIII 245

Query: 124 GNVSIGGAVAFVSIYVIYASAVAANEIFRKHAWRLRLNAIKPLLPVKGSIFSHESEEDDS 183
           G VS  G+V FVSIY  Y  AV+   I  K          KP L  +             
Sbjct: 246 GKVSFWGSVCFVSIYFFYVCAVSTTHILWKR------EESKPNLAER------------- 286

Query: 184 VNASLLESDSKGDVPHLQNKLPHWMWASNVAIYSDEVMKESPDDPKDVWGWNEEETVNGW 243
                   D +G+    +     W   S+   Y               WGW         
Sbjct: 287 -------RDPEGE----KQSKRFWNPDSSTCYY---------------WGW--------- 311

Query: 244 XXXXXXXXXXXXEMPXXXXXXXXIPIVEEERWSKGYAVASATLAPILLALLWNTKDNVSI 303
                       E P        IP+V EERWSK YAV S TLAP+LLA LWNT+   + 
Sbjct: 312 -------FLYVLEFPLYLPRRLTIPVVSEERWSKLYAVISVTLAPLLLAALWNTQRGSA- 363

Query: 304 LNREISYFLGVASGCVFGVLAYLYTKADEPPRKFIFPWVLGGFFMSIIWFYIVANELVAL 363
                                                    G   SII F I     V+L
Sbjct: 364 -----------------------------------------GSKSSIITFMIA----VSL 378

Query: 364 LVAYGVIFGINPSLLGLTVLAWGNSMGDLMSNVALATNGG-DSLQIAMSGCYAGPMFNTL 422
           LV++G I GI+P++LGLTVLAWGNS+GDL++NVALA NGG D +QIA+SGCYAG MFNTL
Sbjct: 379 LVSFGNILGISPAVLGLTVLAWGNSLGDLIANVALAANGGQDGVQIAVSGCYAGAMFNTL 438

Query: 423 VGLGLSMLLGAWSDRPRPYKVPEDSSLFYTMGFLMLGLIWSLVVLPRNDMRPNKIL 478
           VGLGLSM+  AW + P PY +P D SL+ T+GFLM GL+W+LV+LP  +M+P++ L
Sbjct: 439 VGLGLSMVFSAWHEYPAPYIIPIDPSLYETVGFLMSGLLWALVILPNKNMKPDRFL 494


>GSVIVT01037507001 assembled CDS
          Length = 484

 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 103/141 (73%)

Query: 13  GNTAADYFCCSLEKLSNLLKLPPAVAGVTLLPLGNGAPDVFASIAAFVGKNAGAVGLNSV 72
           GNTAA+YFCCSLE LS +LKL P +AGVTLL LGNGAPD+FASI +F+G     VGLNS+
Sbjct: 136 GNTAANYFCCSLEGLSRILKLSPNIAGVTLLSLGNGAPDLFASIVSFMGDETEKVGLNSI 195

Query: 73  LGGAVFITCIVVGVVSLCVAERRIQIDRACFIRDICFFMFTLLSLGTLLIVGNVSIGGAV 132
           LGGA F++ IVVG++S+ V   R  I+R+ FI D+ FF+ +L  L  ++++G +++ GA+
Sbjct: 196 LGGAFFVSSIVVGIISISVCHSRPSIERSSFIWDVTFFLLSLACLLVIIMLGKINLWGAI 255

Query: 133 AFVSIYVIYASAVAANEIFRK 153
           +F S+Y IY   ++ + +  +
Sbjct: 256 SFFSLYFIYVLFISTSHLCHR 276



 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 98/120 (81%), Gaps = 1/120 (0%)

Query: 360 LVALLVAYGVIFGINPSLLGLTVLAWGNSMGDLMSNVALATNGG-DSLQIAMSGCYAGPM 418
           L++LLV+ G+I GI+PS+LGLTVLAWGNS+GDL+SNV +A NGG +  Q+A+SGCYAGP+
Sbjct: 326 LISLLVSLGLILGISPSILGLTVLAWGNSLGDLVSNVTMALNGGAEGAQVALSGCYAGPI 385

Query: 419 FNTLVGLGLSMLLGAWSDRPRPYKVPEDSSLFYTMGFLMLGLIWSLVVLPRNDMRPNKIL 478
           FNTL+GLGL +   AWS+ P  Y +P+D+S + T+GFLM GL+W+LV+LP+ +M  ++ L
Sbjct: 386 FNTLIGLGLPLAFSAWSEYPASYIIPKDNSDYETLGFLMGGLLWALVILPKRNMVLDRCL 445


>GSVIVT01000027001 assembled CDS
          Length = 491

 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/198 (38%), Positives = 109/198 (55%), Gaps = 17/198 (8%)

Query: 256 EMPXXXXXXXXIPIVEEERWSKGYAVASATLAPILLALLWNTKDNVSILNREISYFLG-- 313
           E+P        IP  E   W++ Y  A+  L P  LALL++    +  LN  I + L   
Sbjct: 172 ELPVSLLLKLTIPQTEPSEWNRFYQSANIALCP--LALLYSCNSFIP-LNHPIIFLLPHT 228

Query: 314 --------VASGCVFGVLAYLYTKADEPPRKFIFPWVLGGFFMSIIWFYIVANELVALLV 365
                   + +     VL ++  K  EPP     P VL  F MS+ W   VA EL+  L 
Sbjct: 229 HFPLWSVVLFASSSLAVLHFIIEK--EPPETERMPVVLVAFIMSVFWISTVAGELLNCLA 286

Query: 366 AYGVIFGINPSLLGLTVLAWGNSMGDLMSNVALATNGGDSLQIAMSGCYAGPMFNTLVGL 425
           A G +  + PSLLGLTVLAWGNS+GDL+++VA+A  G  ++  AM+GC+AGPMFN LVGL
Sbjct: 287 ALGSLLELPPSLLGLTVLAWGNSVGDLVADVAIAKAGQPAM--AMAGCFAGPMFNMLVGL 344

Query: 426 GLSMLLGAWSDRPRPYKV 443
           G ++++   +  P+ Y++
Sbjct: 345 GTALVIQTANIYPQAYQL 362



 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 3/107 (2%)

Query: 39  GVTLLPLGNGAPDVFASIAAFVGKNAGAVGLNSVLGGAVFITCIVVGVVSLCVAERRIQI 98
            VTLL LGNGAPDVFAS+AA  G +    G  ++L    F++  VVG V++  A     +
Sbjct: 3   AVTLLALGNGAPDVFASVAAVRGGHP-RTGFGAILSAGTFVSAFVVGFVAIYAAP--FSV 59

Query: 99  DRACFIRDICFFMFTLLSLGTLLIVGNVSIGGAVAFVSIYVIYASAV 145
           D + F+RD+ F++   L L  + +   + +  A+ FV  Y  +   V
Sbjct: 60  DPSQFVRDVFFYLVAALFLFYVYLSAEIFLWQAIGFVGFYAFFVGLV 106