Jatropha Genome Database

JcCB0549911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0549911.10 - phase: 0 
         (139 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021226001 assembled CDS                                       224   8e-60
GSVIVT01020720001 assembled CDS                                       197   1e-51
GSVIVT01008048001 assembled CDS                                       122   6e-29
GSVIVT01011353001 assembled CDS                                       117   2e-27
GSVIVT01008196001 assembled CDS                                       104   1e-23
GSVIVT01029951001 assembled CDS                                        97   2e-21
GSVIVT01009075001 assembled CDS                                        95   1e-20

>GSVIVT01021226001 assembled CDS
          Length = 244

 Score =  224 bits (572), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 110/139 (79%), Positives = 116/139 (83%)

Query: 1   MPVVQKLYDACKESFSTNGPISEEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIXXX 60
           MPVVQKLY+ACKESFS +GP+SEEAL KVR ILD MKPSNVGLEQEAQLAR WK S+   
Sbjct: 1   MPVVQKLYNACKESFSVDGPLSEEALGKVRSILDDMKPSNVGLEQEAQLARGWKGSMHGA 60

Query: 61  XXXXXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSLL 120
                   SHQYPP IKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYG+L 
Sbjct: 61  NGKKVRNGSHQYPPPIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGTLH 120

Query: 121 VKSYDWLDLPGFDDPSQGQ 139
           VKSYDWLDLPG  D SQ +
Sbjct: 121 VKSYDWLDLPGTADLSQAR 139


>GSVIVT01020720001 assembled CDS
          Length = 239

 Score =  197 bits (501), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/139 (69%), Positives = 108/139 (77%), Gaps = 6/139 (4%)

Query: 1   MPVVQKLYDACKESFSTNGPISEEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIXXX 60
           MP +Q+LY+ACK SFS NGP+SEEALEKVR +LD+++PS+VGLEQEAQ AR W   +   
Sbjct: 2   MPPIQRLYNACKSSFSPNGPVSEEALEKVRTMLDKIRPSDVGLEQEAQCARVWSGPMHQC 61

Query: 61  XXXXXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSLL 120
                   SH   P IKYLHLHECD FSIG+FCMPPSSIIPLHNHPGMTVLSKLLYGSL 
Sbjct: 62  NG------SHPSLPPIKYLHLHECDSFSIGVFCMPPSSIIPLHNHPGMTVLSKLLYGSLY 115

Query: 121 VKSYDWLDLPGFDDPSQGQ 139
           VKSYDWLD P   DPSQ +
Sbjct: 116 VKSYDWLDFPAAADPSQAR 134


>GSVIVT01008048001 assembled CDS
          Length = 364

 Score =  122 bits (306), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 81/128 (63%), Gaps = 19/128 (14%)

Query: 4   VQKLYDACKESFSTNGPIS----EEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIXX 59
           VQ LY+ C E F+ +G        + +E++R +LD +KP NVGL  +    R        
Sbjct: 121 VQHLYETCSEVFA-DGKAGFVPPPKDIERLRSVLDNLKPENVGLSADMPYFRA------- 172

Query: 60  XXXXXXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSL 119
                    S + PP + YLH++ECD+FSIGIFC+PPS +IPLHNHPGMTV SKLL+GS+
Sbjct: 173 -------TGSDEVPPPVTYLHIYECDKFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGSM 225

Query: 120 LVKSYDWL 127
            +KSYDW+
Sbjct: 226 HIKSYDWV 233


>GSVIVT01011353001 assembled CDS
          Length = 279

 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 79/128 (61%), Gaps = 22/128 (17%)

Query: 4   VQKLYDACKESFSTNG-----PISEEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIX 58
           VQKLY+ CKE FS+ G     P  +  +EK+  +L+ MK  +VGL  E    R       
Sbjct: 39  VQKLYETCKEVFSSCGAGIVPPPGD--VEKLASVLNSMKLEDVGLNPEMSCFRT------ 90

Query: 59  XXXXXXXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGS 118
                     +    P I YLHL+EC++FSIGIFC+PPS +IPLHNHPGMTV SKLL+GS
Sbjct: 91  ---------EAPDEAPKITYLHLYECEKFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGS 141

Query: 119 LLVKSYDW 126
           + +KSYDW
Sbjct: 142 MHIKSYDW 149


>GSVIVT01008196001 assembled CDS
          Length = 251

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 5/126 (3%)

Query: 4   VQKLYDACKESFSTNG-PISEEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIXXXXX 62
           +Q LYD CK++FS +G P   +A+ K+  +LD + P++VGL ++     +          
Sbjct: 8   IQALYDLCKKTFSPSGTPPPSQAIHKLSSLLDTIGPADVGLREDNPEDDRGHGIFGLNGF 67

Query: 63  XXXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSLLVK 122
                   ++   I YL + EC+ F++ IFC P SS+IPLH+HPGMTVLSK+LYGSL VK
Sbjct: 68  NRIA----RWAQPITYLDIFECNSFTMCIFCFPTSSVIPLHDHPGMTVLSKVLYGSLHVK 123

Query: 123 SYDWLD 128
           +YDW++
Sbjct: 124 AYDWVE 129


>GSVIVT01029951001 assembled CDS
          Length = 275

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 79/134 (58%), Gaps = 15/134 (11%)

Query: 4   VQKLYDACKESFSTNGPISEEA-LEKVRGILDQMKPSNVGLEQEAQLARQWKASIXXXXX 62
           +Q+L+ AC++ F   G + +   + K+  ILD M+P +VGL ++    +  +A+      
Sbjct: 37  LQRLFVACRDVFKGLGTVPQPIDVTKLCHILDNMRPEDVGLSKDIPFFKAKRAA------ 90

Query: 63  XXXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSLLVK 122
                   Q  P +    +++C+ FS+ IF +PP ++IPLHNHPGMTV SKLL GS+ +K
Sbjct: 91  --------QGIPKVTCATVYKCEEFSLCIFFLPPRAVIPLHNHPGMTVFSKLLLGSMHIK 142

Query: 123 SYDWLDLPGFDDPS 136
           SYDW+D  G D  S
Sbjct: 143 SYDWVDPVGSDSSS 156


>GSVIVT01009075001 assembled CDS
          Length = 242

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 71/124 (57%), Gaps = 5/124 (4%)

Query: 4   VQKLYDACKESFSTNGPISEEALEKVRGILDQMKPSNVGLEQEAQLARQWKASIXXXXXX 63
           +Q LYDAC   FS     + + ++ ++ +LD M+  +VG+++ +     + +        
Sbjct: 10  IQVLYDACDAVFSQKELPTFQQIQWLKNLLDLMEAIDVGIDEFSLHQSPFSSPKITKGLV 69

Query: 64  XXXXXSHQYPPTIKYLHLHECDRFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSLLVKS 123
                S      I Y+H+ ECD FS+G+FC P     PLH+HP MTVLSKLLYGS+ VK+
Sbjct: 70  CGQAVSE-----ITYIHIRECDNFSMGVFCFPAGGTFPLHDHPNMTVLSKLLYGSVHVKA 124

Query: 124 YDWL 127
           YDW+
Sbjct: 125 YDWV 128