Jatropha Genome Database

JcCB0549541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0549541.10 - phase: 0 /pseudo
         (417 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015447001 assembled CDS                                       214   6e-56
GSVIVT01015446001 assembled CDS                                       125   3e-29
GSVIVT01008730001 assembled CDS                                       102   4e-22
GSVIVT01034280001 assembled CDS                                        75   5e-14
GSVIVT01023813001 assembled CDS                                        72   6e-13

>GSVIVT01015447001 assembled CDS
          Length = 370

 Score =  214 bits (545), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 105/197 (53%), Positives = 138/197 (70%), Gaps = 2/197 (1%)

Query: 13  SSSLKAISEASRLKGQQVVQIQKAALYSLIKSISDNQEEAEPFYLIDLGVVIRLMDKWNQ 72
           S+SL+    A++LK   V ++      +LI+SIS  Q++ EPFY++DLG V+RLMD W Q
Sbjct: 69  SASLQLRLGATQLKDWDVHRVSGDGFTALIRSISQKQKDREPFYILDLGAVVRLMDMWKQ 128

Query: 73  SLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIETILGLGVNPDRIVYANPCKSA 132
           +LPNV P+YAVKCN +P L+ +LA+LGANFDCAS+AEIET++ LGV   +IVYANPCK  
Sbjct: 129 ALPNVVPYYAVKCNCQPPLITALASLGANFDCASRAEIETVMALGVGAQQIVYANPCKGE 188

Query: 133 SHIKYAARVGVNLTTFDSKQEIDKIKKWHPKCELLLRLKVPSENSSWRSFGNKYGALTEE 192
           SH+KYAA VGVNLTTFDS QEIDKI  WH KC+LLLR+K P++    +          E 
Sbjct: 189 SHLKYAASVGVNLTTFDSMQEIDKIIMWHKKCDLLLRIKAPNDEKDLKIMAEPGRFFAET 248

Query: 193 VASLLQHANQAGLKVVG 209
             +L+  +N  G +V G
Sbjct: 249 AFTLV--SNIIGKRVRG 263



 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 79/143 (55%), Gaps = 29/143 (20%)

Query: 226 SAIATARFAFDTAIKLEMPAMHILNIGGG--FRANPLFDE----------IGKTVNDSVQ 273
           +A+A+    FD A + E+  +  L +G      ANP   E          +  T  DS+Q
Sbjct: 149 TALASLGANFDCASRAEIETVMALGVGAQQIVYANPCKGESHLKYAASVGVNLTTFDSMQ 208

Query: 274 EF-----------------FPDELTSLTMIAEPGRYFVETAFILVTNVIGKRVRGEQIDY 316
           E                   P++   L ++AEPGR+F ETAF LV+N+IGKRVRGE+ +Y
Sbjct: 209 EIDKIIMWHKKCDLLLRIKAPNDEKDLKIMAEPGRFFAETAFTLVSNIIGKRVRGEKREY 268

Query: 317 WIDDGVHGSFNLGAYDRASLSYK 339
           WIDDG++GSFNL AYD++S+  K
Sbjct: 269 WIDDGIYGSFNLPAYDKSSMMVK 291


>GSVIVT01015446001 assembled CDS
          Length = 180

 Score =  125 bits (315), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 76/96 (79%), Gaps = 2/96 (2%)

Query: 246 MHILNIGGGFRANPLFDEIGKTVNDSVQEFFPDELTS--LTMIAEPGRYFVETAFILVTN 303
           MH+L+IGGGF+ +P F EI   + +++ ++FP   TS  L ++AEPGR+F ETAF LV+N
Sbjct: 1   MHVLDIGGGFQESPTFHEIAAVIKEAINDYFPSSETSEDLKIMAEPGRFFAETAFTLVSN 60

Query: 304 VIGKRVRGEQIDYWIDDGVHGSFNLGAYDRASLSYK 339
           +IGKRVRGE+ +YWIDDG++GSFNL AYD++S+  K
Sbjct: 61  IIGKRVRGEKREYWIDDGIYGSFNLPAYDKSSMMVK 96


>GSVIVT01008730001 assembled CDS
          Length = 230

 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 58/78 (74%), Gaps = 1/78 (1%)

Query: 235 FDTAIKLEMPAMHILNIGGGFRANPLFDEIGKTVNDSVQEFFPDELTSLTMIAEPGRYFV 294
           FDTA +L +P MH+LNIGGGF + P FD+    +  S+Q +FP+E   LT+I EPGRYF 
Sbjct: 80  FDTASRLGLPRMHVLNIGGGFTSGPHFDDATSAIKSSLQAYFPNE-HGLTIIGEPGRYFA 138

Query: 295 ETAFILVTNVIGKRVRGE 312
           E+AF LVTN+IGKRVR E
Sbjct: 139 ESAFTLVTNIIGKRVRSE 156



 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 12/109 (11%)

Query: 12  NSSSLKAISEASRLKGQQVVQIQKAALYSLIKS-ISDNQEEAEPFYLIDLGVVIRLMDKW 70
           N  SL+AI  A  ++G++V  + K  L   + S IS  QE  EPFY++DLGVV+ LM+KW
Sbjct: 4   NHKSLQAILGAPGVRGKRVTALSKDGLTDFVLSMISKKQELKEPFYVLDLGVVVSLMEKW 63

Query: 71  NQSLPNVKPFYAVKCNTEPALLLSLA-----------TLGANFDCASQA 108
           +++LP V+PFYAVK   + A  L L            T G +FD A+ A
Sbjct: 64  SRALPLVRPFYAVKAVFDTASRLGLPRMHVLNIGGGFTSGPHFDDATSA 112


>GSVIVT01034280001 assembled CDS
          Length = 399

 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 139/337 (41%), Gaps = 33/337 (9%)

Query: 48  NQEEAEPFYLIDLGVVIRLMDKWNQSLPNVKPF--YAVKCNTEPALLLSLATLGANFDCA 105
           NQ E  PFYL     + R  + + ++L  ++    YA+K N    +L  L  LG      
Sbjct: 2   NQVEKRPFYLYSKPQIARNFEAYREALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLV 61

Query: 106 SQAEIETILGLGVNPDRIVYANPCKSASHIKYAARVGVNLTTFDSKQEIDKI----KKWH 161
           S  E+   L  G +P R ++    K    +  AA+ GV     DS+ ++D I    +   
Sbjct: 62  SGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLDNIISAARIAG 120

Query: 162 PKCELLLRLK--VPSENSSWRSFGN---KYGALTEEVASLLQ----HANQAGLKVVGVSF 212
            K  +LLR+   V  +   + + GN   K+G   E++   L     H N+  LK+VG   
Sbjct: 121 KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNE--LKLVGAHC 178

Query: 213 HVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMHILNIGGG-----FRANPLFDEIGKT 267
           H+GS  +   ++  A A     +   I+ +   +  LNIGGG     + A  +     + 
Sbjct: 179 HLGSTITKVDIFRDA-AVLMVNYIDEIRAQGFEISYLNIGGGLGIDYYHAGAVL-PTPRD 236

Query: 268 VNDSVQEFFPDELTSLTMIAEPGRYFVETAFILVTNVIGKRVRGEQIDYWIDDGVHGSFN 327
           + D+V+E        L +I EPGR  +     LV  VIG +  G +    ID  +     
Sbjct: 237 LIDTVRELVLSR--DLNLIIEPGRSLIANTCCLVNRVIGVKTNGTKNFVVIDGSMAELIR 294

Query: 328 LGAYDRASLSYKVFPQNED------DLAGLITSSYNF 358
              YD       V P   D      D+ G +  S +F
Sbjct: 295 PSLYDAYQHIELVSPPPSDAQISTFDVVGPVCESADF 331


>GSVIVT01023813001 assembled CDS
          Length = 399

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 138/337 (40%), Gaps = 33/337 (9%)

Query: 48  NQEEAEPFYLIDLGVVIRLMDKWNQSLPNVKPF--YAVKCNTEPALLLSLATLGANFDCA 105
           +Q E  PFYL     + R  + + ++L  ++    YA+K N    +L  L  LG      
Sbjct: 2   DQVEKRPFYLYSKPQITRNFEAYKEALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLV 61

Query: 106 SQAEIETILGLGVNPDRIVYANPCKSASHIKYAARVGVNLTTFDSKQEIDKI----KKWH 161
           S  E+   L  G +P R ++    K    +  AA+ GV     DS+ ++D I    +   
Sbjct: 62  SGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLDNIISAARIAG 120

Query: 162 PKCELLLRLK--VPSENSSWRSFGN---KYGALTEEVASLLQ----HANQAGLKVVGVSF 212
            K  +LLR+   V  +   + + GN   K+G   E++   L     H N+  LK+VG   
Sbjct: 121 KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNE--LKLVGAHC 178

Query: 213 HVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMHILNIGGG-----FRANPLFDEIGKT 267
           H+GS  +   ++  A A     +   I+ +   +  LNIGGG     + A  +     + 
Sbjct: 179 HLGSTITKVDIFRDA-AVLMVNYIDEIRAQGFEISYLNIGGGLGIDYYHAGAVL-PTPRD 236

Query: 268 VNDSVQEFFPDELTSLTMIAEPGRYFVETAFILVTNVIGKRVRGEQIDYWIDDGVHGSFN 327
           + D+V+E        L +I EPGR  +     LV  V G +  G +    ID  +     
Sbjct: 237 LIDTVRELVLSR--DLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFVVIDGSMAELIR 294

Query: 328 LGAYDRASLSYKVFPQNED------DLAGLITSSYNF 358
              YD       V P   D      D+ G +  S +F
Sbjct: 295 PSLYDAYQHIELVSPPPSDAQISTFDVVGPVCESADF 331