Jatropha Genome Database

JcCB0549071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0549071.10 + phase: 2 /partial
         (186 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011175001 assembled CDS                                       321   2e-88
GSVIVT01025158001 assembled CDS                                        80   5e-16

>GSVIVT01011175001 assembled CDS
          Length = 446

 Score =  321 bits (822), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 146/170 (85%), Positives = 162/170 (95%)

Query: 1   VRMKVRECMEKEVAPIMAEYWEKASFPFHVIPKLGSLRIAGGTIKGYGCPGMSLAGSAIA 60
           +RMKVR+C+EKE+APIM EYWEKA FPFHV+PKL +LRIAGGTIKGYGCPG+S+  SAI 
Sbjct: 69  LRMKVRKCVEKEIAPIMTEYWEKAEFPFHVVPKLAALRIAGGTIKGYGCPGLSVTASAIT 128

Query: 61  TAEVARVDASCSTFILVHSSLAMLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDYGS 120
           TAEV+RVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQL+TIACWALTEPDYGS
Sbjct: 129 TAEVSRVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLNTIACWALTEPDYGS 188

Query: 121 DASALKTTANKVEGGWVLEGQKRWIGNSTFADLLVIFARNTSTNQINGYV 170
           DAS+LKTTA KVEGGW+LEGQKRWIGNSTFAD+L+IFARNT+TNQINGY+
Sbjct: 189 DASSLKTTATKVEGGWILEGQKRWIGNSTFADVLIIFARNTTTNQINGYI 238


>GSVIVT01025158001 assembled CDS
          Length = 404

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%)

Query: 59  IATAEVARVDASCSTFILVHSSLAMLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDY 118
           IA  E++R   S +     HS+L +  +   G+  QKQKYLP L     +   A++EP+ 
Sbjct: 94  IAMEEISRASGSVALSYGAHSNLCINQLVRNGNPAQKQKYLPKLISGEHVGALAMSEPNA 153

Query: 119 GSDASALKTTANKVEGGWVLEGQKRWIGNSTFADLLVIFARNTSTNQINGYVSY 172
           GSD  ++K  A++V+GG++L G K W  N   A  LV++A+   T    G  ++
Sbjct: 154 GSDVVSMKCKADRVDGGYILNGNKMWCTNGPIAQTLVVYAKTDITAHSKGITAF 207