Jatropha Genome Database
- JcCB0548251.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0548251.10 + phase: 1 /pseudo/partial
(228 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01010995001 assembled CDS 380 e-106
GSVIVT01021910001 assembled CDS 329 7e-91
GSVIVT01033011001 assembled CDS 263 5e-71
GSVIVT01009126001 assembled CDS 215 1e-56
GSVIVT01003183001 assembled CDS 193 5e-50
GSVIVT01000962001 assembled CDS 143 5e-35
GSVIVT01024477001 assembled CDS 123 6e-29
GSVIVT01016368001 assembled CDS 80 6e-16
GSVIVT01003791001 assembled CDS 54 5e-08
GSVIVT01024757001 assembled CDS 51 5e-07
GSVIVT01031395001 assembled CDS 50 1e-06
GSVIVT01009981001 assembled CDS 49 2e-06
>GSVIVT01010995001 assembled CDS
Length = 466
Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/218 (83%), Positives = 201/218 (92%)
Query: 1 SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
SEVSFSALERLVGRCP+LRTLRLNR VPLDRL N+L RAPQLVELGTG YS+E RP+VFS
Sbjct: 82 SEVSFSALERLVGRCPSLRTLRLNRAVPLDRLPNLLRRAPQLVELGTGAYSAEHRPEVFS 141
Query: 61 SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQS 120
SL+GAFS CKELKSLSGFWDVVP YLPA+YP CSG+TSLNLSYATIQSPD+IKLV+QCQ+
Sbjct: 142 SLAGAFSNCKELKSLSGFWDVVPDYLPAVYPACSGITSLNLSYATIQSPDLIKLVTQCQN 201
Query: 121 LQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKLQ 180
LQRLWVLDYIED GL+ALA CKDL+ELRVFPSEP+ +E NV+LTEQGLVSVSEGCPKL
Sbjct: 202 LQRLWVLDYIEDSGLDALAASCKDLQELRVFPSEPYDMEGNVALTEQGLVSVSEGCPKLH 261
Query: 181 SVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
SVLYFC QMTN AL+++A+NRPNMTRFRLCI+EPRT D
Sbjct: 262 SVLYFCRQMTNAALVSIAKNRPNMTRFRLCIIEPRTRD 299
>GSVIVT01021910001 assembled CDS
Length = 471
Score = 329 bits (843), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 159/218 (72%), Positives = 184/218 (84%)
Query: 1 SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
SE+ F+ALERLVGRCPNL+TL+L+ +VPLD L N+L +APQLVELG+G ++ E+ PD++S
Sbjct: 82 SEIRFTALERLVGRCPNLKTLKLSHSVPLDLLPNLLQKAPQLVELGSGLHTKEVHPDLYS 141
Query: 61 SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQS 120
L+GAFSGCK LK L G DVVP YLP +YPIC GLTSLNLS A IQ P++IKLVSQCQ+
Sbjct: 142 KLAGAFSGCKGLKRLCGLRDVVPSYLPTLYPICFGLTSLNLSDAPIQCPELIKLVSQCQN 201
Query: 121 LQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKLQ 180
LQRLWVLDYIED GL ALA CKDLRELRVFPS+PF EPNVSLTEQGLVSVS GCPKL
Sbjct: 202 LQRLWVLDYIEDTGLIALAESCKDLRELRVFPSDPFGQEPNVSLTEQGLVSVSAGCPKLH 261
Query: 181 SVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
SVLYFC +M+N AL T+ARNRPN+TRFRLCI+E PD
Sbjct: 262 SVLYFCRRMSNVALSTIARNRPNLTRFRLCIIERFRPD 299
>GSVIVT01033011001 assembled CDS
Length = 534
Score = 263 bits (672), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 130/219 (59%), Positives = 162/219 (73%), Gaps = 2/219 (0%)
Query: 1 SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
EV+ +ALERLV RCPNL++LRLNR VPLD L IL APQLV+LGTG+Y + + +
Sbjct: 82 GEVNLTALERLVARCPNLKSLRLNRAVPLDALQRILMHAPQLVDLGTGSYVHDPDAETVN 141
Query: 61 SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYA-TIQSPDVIKLVSQCQ 119
L F CK ++S+SGF +V P LPAIYPICS LTSLNLSYA I ++IKL+ C+
Sbjct: 142 KLISTFQKCKSIRSMSGFLEVAPLCLPAIYPICSNLTSLNLSYAPGIHGDELIKLIRYCR 201
Query: 120 SLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKL 179
LQRLW+LD I D GL +A CK+L+ELRVFPS+PF V N ++TE+GLV++S GCPKL
Sbjct: 202 KLQRLWILDCIGDKGLGVVACTCKELQELRVFPSDPFGV-GNAAVTEEGLVAISFGCPKL 260
Query: 180 QSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
S+LYFC QMTN ALIT+A+N PN TRFRLCI++ D
Sbjct: 261 HSLLYFCQQMTNAALITIAKNCPNFTRFRLCILDATKAD 299
>GSVIVT01009126001 assembled CDS
Length = 552
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/223 (49%), Positives = 149/223 (66%), Gaps = 12/223 (5%)
Query: 3 VSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSS-------ELR 55
++F ALERLV R P+LR LRLNR V + +L ++ RAPQL LG+G++SS +
Sbjct: 176 INFEALERLVARSPSLRKLRLNRYVSIGQLYRLMIRAPQLTHLGSGSFSSSDIVAQGDQE 235
Query: 56 PDVFSSLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLV 115
PD S AF+ CK L LSGF +++P YLPAIYP+C+ LTSLN SYA I + + ++
Sbjct: 236 PDYIS----AFAACKSLVCLSGFREIIPDYLPAIYPVCANLTSLNFSYANINTEQLKSVI 291
Query: 116 SQCQSLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEG 175
C LQ WVLD + D GL+A+A CK+LRELRVFP + + ++E GL ++SEG
Sbjct: 292 CHCHKLQIFWVLDSVCDEGLQAVAATCKELRELRVFPIDARE-DSEGPVSEVGLQAISEG 350
Query: 176 CPKLQSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
C KLQS+LYFC +MTN A+I +++N P++ FRLCIM PD
Sbjct: 351 CRKLQSILYFCQRMTNAAVIAMSKNCPDLVVFRLCIMGRHRPD 393
>GSVIVT01003183001 assembled CDS
Length = 553
Score = 193 bits (491), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 119/174 (68%)
Query: 45 LGTGTYSSELRPDVFSSLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYA 104
LGTG++ EL ++ L AF+ CK L +LSG W+ P YLP +YP C LT LNLS A
Sbjct: 222 LGTGSFHQELTTRQYAELESAFNNCKNLNTLSGLWEATPLYLPVLYPACMNLTFLNLSDA 281
Query: 105 TIQSPDVIKLVSQCQSLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSL 164
+QS ++ KL+++C +LQRLWVLD +ED GLEA+ C L ELRVFP++P+ + +
Sbjct: 282 ALQSGELAKLLARCPNLQRLWVLDTVEDKGLEAVGLSCPLLEELRVFPADPYEQDVVHGV 341
Query: 165 TEQGLVSVSEGCPKLQSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
TE G V+VS GCP+L VLYFC QMTN A+ T+ +N P+ T FRLC+M P PD
Sbjct: 342 TEMGFVAVSYGCPRLHYVLYFCRQMTNAAVATIVKNCPDFTHFRLCVMNPGEPD 395
>GSVIVT01000962001 assembled CDS
Length = 300
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 111/172 (64%), Gaps = 2/172 (1%)
Query: 3 VSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFSSL 62
V+ ALE+LV RCPNLR+LRLNR VP + L +L +APQL +LG G++S+ + L
Sbjct: 87 VNLEALEKLVARCPNLRSLRLNRRVPPNVLQRLLQQAPQLEDLGIGSFSNYTDRRTYLRL 146
Query: 63 SGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYAT-IQSPDVIKLVSQCQSL 121
A S C+ ++SLSGF P Y AIYP+CS L SLNLS A + + +++++S+C+ L
Sbjct: 147 QNAVSKCRSIRSLSGFSSFTPLYQAAIYPMCSNLISLNLSKAVELPAHSLMEIISRCKKL 206
Query: 122 QRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVS 173
Q LWVLD I D GL +A CK+L+ LRVF E N +LTE+ V +S
Sbjct: 207 QNLWVLDNIGDKGLGLVADTCKNLQVLRVFRLGSHN-EGNPALTEEETVLIS 257
>GSVIVT01024477001 assembled CDS
Length = 135
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Query: 12 VGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFSSLSGAFSGCKE 71
+ RCPNL++ RLNR VPLD L IL+ APQLV+L TG+Y + + L F CK
Sbjct: 1 MARCPNLKSSRLNRAVPLDALQRILAHAPQLVDLDTGSYVHDPDAETVIKLISTFQKCKS 60
Query: 72 LKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYA-TIQSPDVIKLVSQCQSLQRLWVLD 128
++S+SGF +V P PAIYPICS LTSLNLSYA + ++IKL+ + L+RLW+LD
Sbjct: 61 MRSMSGFLEVAPLCPPAIYPICSNLTSLNLSYAPGMHGDELIKLIHHYKKLRRLWILD 118
>GSVIVT01016368001 assembled CDS
Length = 598
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 12/222 (5%)
Query: 3 VSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFSSL 62
V F LE + C +L +++++ LD L A L E G++S + D +S++
Sbjct: 212 VQFEDLELIARNCRSLTSMKISDFEILD-LVGFFRAATALEEFAGGSFSEQ--SDKYSAV 268
Query: 63 SGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQSLQ 122
S C+ G + +P ++P S L L+L Y + + D L+ +C +L+
Sbjct: 269 SFPPKLCR-----LGLNYMGKNEMPIVFPFASLLKKLDLLYCLLDTEDHCLLIQKCPNLE 323
Query: 123 RLWVLDYIEDIGLEALATFCKDLRELRV--FPSEPFAVEPNVSLTEQGLVSVSEGCPKLQ 180
L + I D GLE LA CK LR LR+ E + ++++GL++++ GC +++
Sbjct: 324 FLEARNVIGDRGLEVLAQSCKKLRRLRIERGADEQEMEDEEGVVSQRGLMALARGCLEIE 383
Query: 181 SVLYFCHQMTNDALITVARNRPNMTRFRLCIM--EPRTPDTP 220
V + +TN AL + + + FRL ++ E R D P
Sbjct: 384 YVAIYVSDITNAALECIGAHSKKLCDFRLVLLEREERITDLP 425
>GSVIVT01003791001 assembled CDS
Length = 127
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 88 AIYPICSGLTSLNLSYAT-IQSPDVIKLVSQCQSLQRLWVLDYIEDIGLEALATFCKDLR 146
IYPICS LTS LSYA I ++IKL+ + LQRLW+LD + G+ + + D
Sbjct: 16 TIYPICSNLTSFKLSYALRIHETELIKLIHHYRKLQRLWILDCTGNKGVGVVVSTSIDFL 75
Query: 147 ELRVFPSEPFAVE 159
+ ++P + F ++
Sbjct: 76 D-AIWPFQIFIIK 87
>GSVIVT01024757001 assembled CDS
Length = 68
Score = 50.8 bits (120), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 78 FW-DVVPGYLPAIYPICSGLTSLNLSYAT-IQSPDVIKLVSQCQSLQRLWVLD 128
FW + + AIYPI S LTS NLSYA I ++IKL+ + LQRLW+LD
Sbjct: 14 FWITTMATIMLAIYPIYSNLTSFNLSYALGIHGIELIKLIHHYKKLQRLWILD 66
>GSVIVT01031395001 assembled CDS
Length = 94
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 88 AIYPICSGLTSLNLSYA-TIQSPDVIKLVSQCQSLQRLWVLDYIEDIGL 135
AI PICS L S NLSYA I ++IKL+ + LQ+LW+LD D GL
Sbjct: 3 AINPICSNLISFNLSYALEIHGTELIKLICHYKKLQQLWILDCARDKGL 51
>GSVIVT01009981001 assembled CDS
Length = 428
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 60 SSLSGAFSGCKELKSL--SGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPD-----VI 112
SSL GC L L SG L + C L LNL + + +
Sbjct: 202 SSLYALAHGCPNLTKLNISGCTAFSDAALAHLTSFCRRLKILNLCGCGKAASNRALQAIG 261
Query: 113 KLVSQCQSLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSV 172
+ SQ QSL W D + D G+ +LA C DLR L + V +T++ ++++
Sbjct: 262 RNCSQLQSLNLGWCED-VSDAGVMSLAYGCPDLRALDLCGC--------VHITDESVIAL 312
Query: 173 SEGCPKLQSV-LYFCHQMTNDALITVARNR 201
+ C L+S+ LYFC +T+ A+ ++A++R
Sbjct: 313 ANRCLHLRSLGLYFCQNITDKAMYSLAQSR 342