Jatropha Genome Database

JcCB0545911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0545911.10 - phase: 0 /partial
         (102 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022145001 assembled CDS                                       143   1e-35
GSVIVT01031765001 assembled CDS                                       100   2e-22
GSVIVT01028640001 assembled CDS                                        83   2e-17
GSVIVT01021078001 assembled CDS                                        72   5e-14

>GSVIVT01022145001 assembled CDS
          Length = 212

 Score =  143 bits (361), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 85/101 (84%), Gaps = 3/101 (2%)

Query: 3   ESVEVETSVYYSCRE-RRETTPSSQLRPESSDELDSIARPSPEANTLRRSTAEKMPTESE 61
           ESVE+ETS Y  CRE RRETTPSS+LR ES D+L+S ARPS EAN   RST EKMP+ESE
Sbjct: 114 ESVEIETSAYSDCRESRRETTPSSELRAES-DDLESTARPS-EANYRHRSTVEKMPSESE 171

Query: 62  LDEFFTEAEKSIQKQFAEKYNYDIVKDEPLEGRYEWVRLKP 102
           L+EFF  AEK +QK+F+EKYNYDIVKD P+EGRYEWVRLKP
Sbjct: 172 LEEFFAAAEKDVQKRFSEKYNYDIVKDVPMEGRYEWVRLKP 212


>GSVIVT01031765001 assembled CDS
          Length = 234

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 72/100 (72%), Gaps = 2/100 (2%)

Query: 1   QAESVEVETSVYYSCRERRETTPSSQLRPESSDELDSIARPSPEANTLRRSTAEKMPTES 60
           +A+  E E S Y   R  RETTP S+L  +S+ E++S A+ +  A   R+STA KMP+  
Sbjct: 135 EAKGFETENSTYSDGRFSRETTPVSELYADSA-EMESTAKTTA-AKPRRKSTAGKMPSTV 192

Query: 61  ELDEFFTEAEKSIQKQFAEKYNYDIVKDEPLEGRYEWVRL 100
           E++EFF+ AEK  Q++FAEKYNYDIVKD P+EGRY+WVRL
Sbjct: 193 EIEEFFSAAEKYQQQRFAEKYNYDIVKDAPMEGRYQWVRL 232


>GSVIVT01028640001 assembled CDS
          Length = 218

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 4/91 (4%)

Query: 16  RERRETTPSSQLR-PESSDELDSIARPSPEANTLRR---STAEKMPTESELDEFFTEAEK 71
           R  RE+TP S +R P++     S  RPS  + T RR   +    +PT +EL+EFFT AE+
Sbjct: 128 RSTRESTPCSLIRDPDTIATPGSTTRPSSSSVTTRRVRSNVLGDIPTAAELEEFFTHAEE 187

Query: 72  SIQKQFAEKYNYDIVKDEPLEGRYEWVRLKP 102
             QK+F +KYN+DIV D PL GR+EWV++ P
Sbjct: 188 HAQKEFMDKYNFDIVNDTPLPGRFEWVQVSP 218


>GSVIVT01021078001 assembled CDS
          Length = 203

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 8   ETSVYYSCRER--RETTPSSQLR-PESSDELDSIARPSPEANTLRR---STAEKMPTESE 61
           E  + +  R+R  RETTP S +R PE+     S  +P+  +   RR   S    +PT  E
Sbjct: 103 ENVLDFEARDRSTRETTPCSLIRDPETIRTPGSTTKPASSSGINRRMDNSRQGHVPTTQE 162

Query: 62  LDEFFTEAEKSIQKQFAEKYNYDIVKDEPLEGRYEWVRL 100
           +D+FF  AE+  Q+ F +KYN+D V D+PL GR+EWV+L
Sbjct: 163 MDQFFQSAEEEQQRVFTDKYNFDPVNDKPLSGRFEWVKL 201