Jatropha Genome Database

JcCB0545461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0545461.10 - phase: 0 /partial
         (264 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011100001 assembled CDS                                       155   3e-38
GSVIVT01012049001 assembled CDS                                        64   6e-11

>GSVIVT01011100001 assembled CDS
          Length = 1459

 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/295 (35%), Positives = 152/295 (51%), Gaps = 39/295 (13%)

Query: 2   EVCSERLQLRDVGAEYIGSSEHSQLIPALISHADEASKVTSQNGSNVLQYSAEDTGCENT 61
           ++ + R +  D G + +G   H  ++    S  DE  KV+ QN +N+     +D   ENT
Sbjct: 686 DLINRRAEKPDGGLDNLG---HIGMVSGPGSKTDEIPKVSPQNCTNMPLCDVKDNCHENT 742

Query: 62  ESLRSPIHGNNQVDGMSEEAKGLKYEKRRKEASY-----------------------ASI 98
           E ++ P   N Q++ M +  K  +++  +KE +                        AS+
Sbjct: 743 EPVKHPQDENIQINSMCKAVKEGEHDPTQKEMNAPPSPTSVKDVMVDVQGTQHLSHSASV 802

Query: 99  SDHHLHHSGVLVAQSSPVPADGXXXXXXXXXXXXXXCHVSTSESANFVQHSGCSTPN-HS 157
           SD HL    V   + S  P DG              C +STS+++  +Q++GC +P  H 
Sbjct: 803 SDEHLDDKDVSGDRLSLSPTDGVYSTARASLPNTLTCPMSTSDNSTSLQNNGCCSPGVHL 862

Query: 158 HQKTTVCT--SVEEEKIELLVPQLAKSAGRWSNYAEAHAALSSFEGTLGSFDQDKGEHRS 215
           HQ+ T+C+  + EE K E  V    KS G+WSN AEA AAL+SFE  LG+  + K     
Sbjct: 863 HQEKTICSFDANEESKFEATVTHRPKSMGKWSNSAEASAALTSFEAMLGTLTRTKESIGR 922

Query: 216 SNS----------HSHVVEILARHLESESSLHRRVDLFFLVDSITQCSRGLKGKV 260
           +             + VVEILAR+LE+E+SLH+RVDLFFLVDSITQCSRGLKG V
Sbjct: 923 ATRVAIDCAKFGIAAKVVEILARNLENEASLHKRVDLFFLVDSITQCSRGLKGDV 977


>GSVIVT01012049001 assembled CDS
          Length = 1240

 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 48/90 (53%), Gaps = 16/90 (17%)

Query: 182 SAGRWSNYAEAHAALSSFEGTLGSFDQDK-------------GEHRSSNSHSHVVEILAR 228
           + G  S   EA  A  +FEG + +  + K              ++  +N    VVE+L R
Sbjct: 692 AGGSLSGGTEAAVARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIAN---EVVELLIR 748

Query: 229 HLESESSLHRRVDLFFLVDSITQCSRGLKG 258
            LESE S HRRVDLFFLVDSITQCS   KG
Sbjct: 749 KLESEPSFHRRVDLFFLVDSITQCSHSQKG 778