Jatropha Genome Database

JcCB0545221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0545221.10 + phase: 1 /partial
         (291 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035337001 assembled CDS                                       363   e-101
GSVIVT01016905001 assembled CDS                                       189   1e-48

>GSVIVT01035337001 assembled CDS
          Length = 671

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/294 (63%), Positives = 216/294 (73%), Gaps = 8/294 (2%)

Query: 3   EKPNHKMECSAENAIGKTSFSSAKNGSQPSNNGSYLGNPPPVPVPTDSKMSPWCFQHSLG 62
           E+ +H++ECSAENA+GKT   S KNG+ PSN G Y+GNPPP P PTDSKM PWC+    G
Sbjct: 379 ERASHQLECSAENAVGKTHLPSVKNGNPPSNYGPYIGNPPPAPAPTDSKMGPWCYPQPPG 438

Query: 63  HQWLVPVMSPSEGLVYKPYNAPGFLGSACGGCGPFGASPMVGNFINPTYGIPPSSHHHQG 122
           HQWLVPVMSPSEGLVYKPY  PGF+ + CGGCGP G++PM G+FINP YG+ PSSHHHQG
Sbjct: 439 HQWLVPVMSPSEGLVYKPYPGPGFMSTVCGGCGPMGSAPMTGSFINPAYGV-PSSHHHQG 497

Query: 123 TGFIPGV----HGYFPPYGMPVM-HPAMSGSAVEQMNYFXXXXXXXXXXXXXXXXANFNV 177
            G  PG     HGYFPPYGM VM HP +SGSAVEQMN F                A+FN+
Sbjct: 498 IGVHPGTPPIGHGYFPPYGMSVMNHPTISGSAVEQMNRFAGHGSLSQSGQLSGGGASFNM 557

Query: 178 QHQSSCNLPNQKSGSVPQVPKFRASKDTELRGSTASSPGERVQGVGTVEAAEGRDALLLF 237
           QHQ+SCN+P  K  ++PQ  KF  SKD+E +GSTASSP ER Q VGT + AEGRD L LF
Sbjct: 558 QHQNSCNVPTPKR-AIPQGVKFPMSKDSEFQGSTASSPSEREQQVGTGDTAEGRDPLPLF 616

Query: 238 PVAPAT-PEGASQPQETDMPTRVIKVVPHNPRSATESAARIFKSIQAERKHKNS 290
           P+APA  P G  QP  TD PTRVI+VVPHNPRSATESAARIF+SIQ ERK  +S
Sbjct: 617 PMAPAAIPAGDPQPNGTDQPTRVIRVVPHNPRSATESAARIFQSIQDERKQLDS 670


>GSVIVT01016905001 assembled CDS
          Length = 730

 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 166/307 (54%), Gaps = 31/307 (10%)

Query: 3   EKPNHKMECSAENAIGKTSFSS----AKNGSQPSNNGSYLGNPPPVPVPTDSKMSPWCFQ 58
           +K +   E + ++A+G   F+S     K  +    N   L N PPV + TD++ + WCF 
Sbjct: 431 QKQDSNNEGAVKDAVGNPPFASPVDVDKIYAAQQTNQRPLENQPPVSMATDTQPTSWCFH 490

Query: 59  HSLGHQWLVPVMSPSEGLVYKPYN-----APGFLGSACGGCGPFGASPMVGNFINPTYGI 113
            S G+QWLVPVMSPSEGL+YKPY       P  +    G   P   + M G+F N TYGI
Sbjct: 491 PSQGNQWLVPVMSPSEGLIYKPYAGQCSPTPRLMSPFYGNYRPVNLTVMGGDFFNTTYGI 550

Query: 114 PPSSHHHQGTGFIPGV----HGYFPPYGMPVMHPAMSGSAVEQMNYFXXXXXXXXXXXXX 169
           P S    QG   +P        YFPPYG P+++P+ SGSAVEQMN               
Sbjct: 551 PISL--QQGIEIVPSNPFLGQTYFPPYGKPLVNPSTSGSAVEQMNLSVGDQSSRPNNHVS 608

Query: 170 XXXANFNVQ---HQSSCNLPNQKSGSVPQV-PKFRASKDTELRGSTASSPGERVQGVGTV 225
               N  VQ   +QS  N+P+QKSG +     KF+ASK +EL+ STAS+P +R Q     
Sbjct: 609 VGDINATVQSVHYQSLGNMPSQKSGGILGCFGKFQASKSSELQVSTASTPSKRAQA---- 664

Query: 226 EAAEGRDALLLFPVAPATPEG--ASQPQETDMPTRVIKVVPHNPRSATESAARIFKSIQA 283
                 DAL LFPVAP   E     Q    +  TR IKVVPH  +SA+ESAARIF+SIQ 
Sbjct: 665 ------DALPLFPVAPKIQESDQLDQIHGNEKQTRAIKVVPHKHKSASESAARIFRSIQE 718

Query: 284 ERKHKNS 290
           ER  +++
Sbjct: 719 ERNQRST 725