Jatropha Genome Database

JcCB0545081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0545081.10 + phase: 0 
         (227 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009126001 assembled CDS                                       181   2e-46
GSVIVT01003183001 assembled CDS                                       175   2e-44
GSVIVT01016368001 assembled CDS                                       124   3e-29
GSVIVT01023363001 assembled CDS                                        68   3e-12
GSVIVT01033011001 assembled CDS                                        55   3e-08
GSVIVT01010995001 assembled CDS                                        50   7e-07
GSVIVT01021910001 assembled CDS                                        47   6e-06

>GSVIVT01009126001 assembled CDS
          Length = 552

 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/157 (59%), Positives = 103/157 (65%), Gaps = 42/157 (26%)

Query: 67  EYQAPYPDQVLENVLENVLCFLTSRRDRNAASLVCRSWYRVEALTRSELFIGNCYAVSPQ 126
           E+Q+P PDQVLENVLENVL FLTSRRDRNA SL                           
Sbjct: 20  EFQSPSPDQVLENVLENVLLFLTSRRDRNAVSL--------------------------- 52

Query: 127 RATARFARIRSLTLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHLKRMTVTD 186
                          GKPRFADFNLMPP WGA+F PWV++MA +YPWLEKV+LKRM VTD
Sbjct: 53  ---------------GKPRFADFNLMPPNWGAYFTPWVTAMATSYPWLEKVYLKRMFVTD 97

Query: 187 DDLALLAESFLGFKELVLVCCDGFGTSGLAVVASRCR 223
            DL LLA+SF  FKELVLVCCDGFGTSGLA +AS+CR
Sbjct: 98  RDLELLAQSFPAFKELVLVCCDGFGTSGLAGIASKCR 134


>GSVIVT01003183001 assembled CDS
          Length = 553

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 106/154 (68%), Gaps = 4/154 (2%)

Query: 70  APYPDQVLENVLENVLCFLTSRRDRNAASLVCRSWYRVEALTRSELFIGNCYAVSPQRAT 129
           +P+PD+VLE VL      + S +DR++ SLVC+ WY  E  +R+ +FIGNCY+VSP+   
Sbjct: 22  SPFPDEVLERVLG----LVKSHKDRSSVSLVCKDWYNAERWSRTHVFIGNCYSVSPEIVA 77

Query: 130 ARFARIRSLTLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHLKRMTVTDDDL 189
            RF  IRS+TLKGKPRF+DFNL+P  WGA    W+   A  YP LE++ LKRMTVTD+ L
Sbjct: 78  RRFPNIRSVTLKGKPRFSDFNLVPLNWGADIHAWLVVFASKYPLLEELRLKRMTVTDESL 137

Query: 190 ALLAESFLGFKELVLVCCDGFGTSGLAVVASRCR 223
             LA +F  FK L L+ CDGF T GLA +A+ C+
Sbjct: 138 EFLATTFTNFKALSLLSCDGFSTDGLAAIATHCK 171


>GSVIVT01016368001 assembled CDS
          Length = 598

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 86/148 (58%), Gaps = 3/148 (2%)

Query: 78  ENVLENVLCFLTSRRDRNAASLVCRSWYRVEALTRSELFIGNCYAVSPQRATARFARIRS 137
           + VL  V+ ++   +DR+A SLVCR WY ++ALTR  + I  CY  +P R   RF  + S
Sbjct: 23  DEVLNCVMPYIHDPKDRDAVSLVCRRWYELDALTRKHITIALCYTTTPGRLRGRFPHLES 82

Query: 138 LTLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHLKRMTVTDDDLALLAESFL 197
           L LKGKPR A FNL+   WG +  PWV  ++  +  L+ +H +RM V D DL LLA++  
Sbjct: 83  LKLKGKPRAAMFNLIMEDWGGYVTPWVKEISDYFDCLKSLHFRRMIVKDSDLQLLAQA-R 141

Query: 198 GFKELVLVC--CDGFGTSGLAVVASRCR 223
           G   LVL    C GF T GL  V   CR
Sbjct: 142 GRVLLVLKLDKCSGFSTDGLLHVGRSCR 169


>GSVIVT01023363001 assembled CDS
          Length = 147

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 167 MAKAYPWLEKVHLKRMTVTDDDLALLAESFLGFKELVLVCCDGFGTSGLAVVASRCR 223
           MA AYP LE++ LKRM +TD+ L L++ SF  FK LVL  C+GF T GLA +A+ CR
Sbjct: 1   MAMAYPMLEELRLKRMVMTDESLELISRSFKNFKVLVLSSCEGFSTDGLAAIAANCR 57


>GSVIVT01033011001 assembled CDS
          Length = 534

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query: 182 MTVTDDDLALLAESFLGFKELVLVCCDGFGTSGLAVVASRCRYV 225
           M V+++ L LLA SF+ FK LVLV C+GF T GLA VA+ CR++
Sbjct: 1   MVVSNEGLELLARSFVNFKSLVLVSCEGFTTDGLAAVAANCRFL 44


>GSVIVT01010995001 assembled CDS
          Length = 466

 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 29/42 (69%)

Query: 182 MTVTDDDLALLAESFLGFKELVLVCCDGFGTSGLAVVASRCR 223
           M VTD+ L L++ SF  FK LVL  C+GF T GLA +A+ CR
Sbjct: 1   MVVTDESLELISRSFKNFKVLVLSSCEGFSTDGLAAIAANCR 42


>GSVIVT01021910001 assembled CDS
          Length = 471

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 29/42 (69%)

Query: 182 MTVTDDDLALLAESFLGFKELVLVCCDGFGTSGLAVVASRCR 223
           M V+D+ L L+A+ F  F+ LV+  C+GF T GLA +A+ CR
Sbjct: 1   MVVSDEALELIAKKFKNFRVLVMYSCEGFSTDGLATIAANCR 42