Jatropha Genome Database

JcCB0544731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0544731.10 - phase: 2 /pseudo/partial
         (235 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026500001 assembled CDS                                       159   8e-40
GSVIVT01026502001 assembled CDS                                       126   7e-30

>GSVIVT01026500001 assembled CDS
          Length = 670

 Score =  159 bits (403), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 96/154 (62%), Gaps = 25/154 (16%)

Query: 107 LLNINQTTSLAIRSAIQKGYVGVKPGWTRISFPYYMSEEEFEFILAAVEFIAIYGQRFLP 166
           LL +++T SLA RSAIQKGY G+KPGWTRISFPYYMS EEFEFIL A+EFIA YGQRFLP
Sbjct: 517 LLKVDETQSLAFRSAIQKGYSGIKPGWTRISFPYYMSSEEFEFILDALEFIATYGQRFLP 576

Query: 167 LYHFNWKNGNWTXXXXXXXXXXXXC---------------GGR----------IFNKHTS 201
           LYHFNWK G+W+                            G R          I +++ S
Sbjct: 577 LYHFNWKTGSWSFRKKALKDTSTPTLSLFKAMPAFSSISDGSRLHTHAGNKDEIISRYAS 636

Query: 202 YLEMAKNIANLLPKFPSQRKLPEDLDHNLLXFRV 235
           YL  A  IA+LL KFP  R++PED+D NL+ FRV
Sbjct: 637 YLATANKIASLLEKFPPHRRIPEDIDVNLITFRV 670



 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 1   IEKQENNYIEKALERLKSNKNIWVLGKNNSKRKKETSYILL 41
           IE++ENNY E ALERL  N NIWVLG   +KR+   S++ L
Sbjct: 446 IEEEENNYTEAALERLLPNPNIWVLGNTTAKRQAILSFLPL 486


>GSVIVT01026502001 assembled CDS
          Length = 493

 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 58/72 (80%), Positives = 63/72 (87%)

Query: 107 LLNINQTTSLAIRSAIQKGYVGVKPGWTRISFPYYMSEEEFEFILAAVEFIAIYGQRFLP 166
           LLN+++T SLA RSAI  G  GVKPGWTRISFPYYMS EEFEFILAA+EFIA YGQRFLP
Sbjct: 389 LLNVDETRSLAFRSAIHNGNNGVKPGWTRISFPYYMSIEEFEFILAALEFIATYGQRFLP 448

Query: 167 LYHFNWKNGNWT 178
           LY+FNWK GNWT
Sbjct: 449 LYNFNWKTGNWT 460